PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009805009.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 498aa MW: 53468 Da PI: 8.3087

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009805009.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_009805009.1 55 FVCEICNKGFQRDQNLQLHRRGH 77 89*******************88 PP
2	zf-C2H2	16.7	2e-05	131	153	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ XP_009805009.1 131 FKCERCTKKYAVQSDWKAHMKTC 153 89*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.6E-5	54	77	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.13E-7	54	77	No hit	No description
SMART	SM00355	0.017	55	77	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	55	77	IPR007087	Zinc finger, C2H2
Pfam	PF12171	7.9E-5	55	77	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	57	77	IPR007087	Zinc finger, C2H2
SMART	SM00355	250	96	126	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.6E-5	119	152	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.13E-7	126	152	No hit	No description
SMART	SM00355	63	131	151	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MADMENSSSM TVAGSSLEET ITQQNFPVKK KRNLPDPEAE VIALSPKALM ATNRFVCEIC 60 NKGFQRDQNL QLHRRGHNLP WKLRQRTSKE VKKRVYVCPE ATCIHHDPSR ALGDLTGIKK 120 HFCRKHGEKK FKCERCTKKY AVQSDWKAHM KTCGTREYRC DCGTLFSRRD SFVTHRAFCD 180 ALAQESARAQ PMGITNTEEN LKADEAVTSS SSPPPQPLTP STGVLSPVLS IQSSEFPADN 240 QNQAGVQLQA AQGTTTPVST TTVAATTIST TASTTGPSSS KVFASVFPSS STSVGHPHSS 300 YSNILCAIGP EQMTAIEPMS LSLSSSFYLS ANNGSTLFQD HTGHVQHYGS TTQPALSATA 360 LLQKAAQMGA TSSNNSFLRG LGLAMSSTST SDNISRVKLE NNVELPGLGI PLPSNGPSGQ 420 WTDLMMGPSH ESMMFGNKPP TLDFLGLGND ANVTSSNGFS ALLSSMDGGF GVATSSYGGV 480 ATRGQPWDDH SDRKPSML

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MADMENSSSM TVAGSSLEET ITQQNFPVKK KRNLPDPEAE VIALSPKALM ATNRFVCEIC  60
NKGFQRDQNL QLHRRGHNLP WKLRQRTSKE VKKRVYVCPE ATCIHHDPSR ALGDLTGIKK  120
HFCRKHGEKK FKCERCTKKY AVQSDWKAHM KTCGTREYRC DCGTLFSRRD SFVTHRAFCD  180
ALAQESARAQ PMGITNTEEN LKADEAVTSS SSPPPQPLTP STGVLSPVLS IQSSEFPADN  240
QNQAGVQLQA AQGTTTPVST TTVAATTIST TASTTGPSSS KVFASVFPSS STSVGHPHSS  300
YSNILCAIGP EQMTAIEPMS LSLSSSFYLS ANNGSTLFQD HTGHVQHYGS TTQPALSATA  360
LLQKAAQMGA TSSNNSFLRG LGLAMSSTST SDNISRVKLE NNVELPGLGI PLPSNGPSGQ  420
WTDLMMGPSH ESMMFGNKPP TLDFLGLGND ANVTSSNGFS ALLSSMDGGF GVATSSYGGV  480
ATRGQPWDDH SDRKPSML

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-34	127	196	3	72	Zinc finger protein JACKDAW
5b3h_F	5e-34	127	196	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009805009.1	0.0	PREDICTED: zinc finger protein MAGPIE-like isoform X2
Swissprot	Q9LVQ7	1e-131	IDD1_ARATH; Zinc finger protein ENHYDROUS
Swissprot	Q9SCQ6	1e-131	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A1U7Z0V5	0.0	A0A1U7Z0V5_NICSY; zinc finger protein MAGPIE-like isoform X2
STRING	XP_009805007.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-110	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]