PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009804983.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 332aa MW: 37331.6 Da PI: 5.9493 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00043 | 195 | 217 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k F++ L H +H XP_009804983.1 195 YRCETCNKNFRSYQALGGHRASH 217 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.0004 | 241 | 263 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++Fs+ L H r+H XP_009804983.1 241 HECPICYRVFSSGQALGGHKRSH 263 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.87 | 5 | 27 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.037 | 5 | 27 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 7 | 27 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.8E-5 | 7 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.08 | 195 | 217 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.388 | 195 | 222 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.47E-8 | 195 | 263 | No hit | No description |
Pfam | PF13912 | 1.1E-10 | 195 | 219 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 197 | 217 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 241 | 263 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.307 | 241 | 263 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.2E-12 | 241 | 263 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 243 | 263 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MEKHKSCKLC SRKFANGRAL GGHMRSHMMN LYIQQQQQKN HQISDETESI PSSSWSSEEE 60 NGEKSKILNL SDFSVEEAAD DSVVLPDKES ETESSKNPTR SRRSKRVRKS SIINPNFVKV 120 TEYNSSLVET EPVSSISETS PEEDVAHCLM MLSRDNWIKQ QVDHYSDEEE EEEYKEENSG 180 VQVKVITKNR GRGKYRCETC NKNFRSYQAL GGHRASHKKI KVSNYNNEVV ENVGVIEEKI 240 HECPICYRVF SSGQALGGHK RSHVIGVSTA AANISVPVFI PTAAKLEFSR NGGSLIDLNL 300 PPPMEELDDE IISQVEVSAV SDDAEFVNPI KH |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009804983.1 | 0.0 | PREDICTED: zinc finger protein ZAT9-like | ||||
Refseq | XP_016512842.1 | 0.0 | PREDICTED: zinc finger protein ZAT9-like | ||||
TrEMBL | A0A1S4DH85 | 0.0 | A0A1S4DH85_TOBAC; zinc finger protein ZAT9-like | ||||
TrEMBL | A0A1U7YPH2 | 0.0 | A0A1U7YPH2_NICSY; zinc finger protein ZAT9-like | ||||
STRING | XP_009804983.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1095 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-47 | C2H2-like zinc finger protein |