PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009804953.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 436aa    MW: 48100.7 Da    PI: 4.9756
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009804953.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS368.68.5e-113754333374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                      lLl+cAe+v+ ++l  a++lL ++ el+sp g + +R+aayf+eAL+ar+ +s  + y+ l+ ++ + ++s++ ++al+ ++ +sP++kfsh t
  XP_009804953.1  75 GLLLQCAECVAMENLDDASNLLPEIAELSSPFGFSAERVAAYFAEALSARIISSHLRFYSPLNLKTLTLTHSQKLFTALQSYNTISPLIKFSHYT 169
                     58********************************************************************************************* PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                     aNqaI++a+ege++vH+iD+di+qGlQWp L+q L+sR+++  s++iTgvgs    s e le+tg+rL++fA+++g+pfef++l  k  +  +l+
  XP_009804953.1 170 ANQAIYQALEGEDHVHVIDLDIMQGLQWPGLFQILSSRSRKLRSVKITGVGS----SMELLESTGRRLTEFANSFGLPFEFKPLEGKIGNITDLS 260
                     ****************************************************....***************************988888888*** PP

            GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                     +L vk gE ++Vn+++  h l+d ++s       + +l+  l+Pk++++veq+++h +++Fl rf+eal+yysalfdsl  +l+ es er++vE+
  XP_009804953.1 261 QLGVKMGEIIVVNWMH--HCLYDITGSDLG----TFRLLTLLQPKLITIVEQDLSH-GGNFLGRFVEALHYYSALFDSLGDGLSVESVERHTVEQ 348
                     ***************9..777766777777....99********************.789*********************************** PP

            GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +l+g ei+n+va  g +r+ +   +e+W + l++ GF pv+ls + a+qa+lll +++ +gy++ ee+g+l lgWkd +L+++SaW+
  XP_009804953.1 349 QLFGCEIRNIVAVGGPKRTGEVP-VERWGDELKRIGFLPVSLSGTPAAQASLLLGMFP-KGYTLVEENGCLKLGWKDLSLLTASAWQ 433
                     *****************887765.9*********************************.9**************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.55847414IPR005202Transcription factor GRAS
PfamPF035142.9E-11075433IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MLQSLQFSVS ASASNSNSSS SMSSKRSIAD FTPVHSDEDP LHLTKRPRNN EEEQFEEGED  60
QLPVDTDSVG LRLLGLLLQC AECVAMENLD DASNLLPEIA ELSSPFGFSA ERVAAYFAEA  120
LSARIISSHL RFYSPLNLKT LTLTHSQKLF TALQSYNTIS PLIKFSHYTA NQAIYQALEG  180
EDHVHVIDLD IMQGLQWPGL FQILSSRSRK LRSVKITGVG SSMELLESTG RRLTEFANSF  240
GLPFEFKPLE GKIGNITDLS QLGVKMGEII VVNWMHHCLY DITGSDLGTF RLLTLLQPKL  300
ITIVEQDLSH GGNFLGRFVE ALHYYSALFD SLGDGLSVES VERHTVEQQL FGCEIRNIVA  360
VGGPKRTGEV PVERWGDELK RIGFLPVSLS GTPAAQASLL LGMFPKGYTL VEENGCLKLG  420
WKDLSLLTAS AWQPCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1566743413380Protein SCARECROW
5b3h_A1e-1566743412379Protein SCARECROW
5b3h_D1e-1566743412379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804953.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ11e-170SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A1U7YPD80.0A0A1U7YPD8_NICSY; scarecrow-like protein 23
STRINGXP_009804953.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107452126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-160GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]