PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009804922.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 768aa MW: 87242.2 Da PI: 6.1973

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009804922.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	373.9	2.1e-114	395	766	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+av+++d + a +lL++++ ++sp gd +qRla++f+ +++arla+++s++ykal ++ts ++ l+a++l+ sP+ k+s XP_009804922.1 395 LRTLLINCAQAVAADDCRSAIELLKQIRLHSSPFGDGNQRLAHCFADGMEARLAGTGSQIYKALVNKKTS---AADFLKAYHLYLASSPFRKLSG 486 6789**********************************************************999999...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 ++ N++I+ + ++ rvH+iDf+i +G+QWp+L+q +++R++gpp+lRiTg++ p++g +e++eetg+rLa++A++++vpfe+++ +ak++e+ XP_009804922.1 487 FASNKTIMTKAGNAARVHVIDFGILYGFQWPTLIQRISAREGGPPKLRITGIEFPQPGfrPAERIEETGRRLADYAQTFNVPFEYHA-IAKKWET 580 *****************************************************9*************************.7** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++le+L+++++E l+Vn+ ++ ++l+de+v ++s r+ vL+l+++++P+++++ + ++++ F++rf e l ++salfd+lea++pres er+ XP_009804922.1 581 IRLEDLKLEKDEFLVVNCLYRFKNLPDETVLTDSSRTLVLDLIRKINPDIFIHGIVNGAYSAPFFVTRFREVLFHFSALFDMLEANVPRESPERM 675 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Ere++gre+ nv+aceg er+er et+++W+ r +a F+++p++ ++++ a + + + + ++e++++l+lgWk+r+++++S+W+ XP_009804922.1 676 LIEREIFGREALNVIACEGWERVERPETYKQWQVRNLRARFTQIPFEREVMNRAIEKVTSSYHKDFVIDENNKWLLLGWKGRTIYALSCWK 766 **************************************************99999999888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.101	369	746	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.4E-112	395	766	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 768 aa Download sequence Send to blast
MDPRFNSFPT SMNGFSLENQ SLPISSNRWK NNEPRFEAIY QDQKLVNGPR FENNFVPNNV 60 GGVQSVSNDP LPTSSNKALT SDIGAEDEYN EDFDFSDTVL SYINQMLMEE DMEDKTHMLQ 120 ESLEFQAKEK SFYEALGKKY PPSPQQNLSI TYQNDEIPDE YCSGSLYNFT SNSNDSSGYL 180 IDPTVINISN DLDSSYVQGL SVCNGTYSSI SSSSSLNNIV DGFLDSPVSP LHTPDIYNDS 240 HPIWNFRKGV EEANKFLPTN IKLLDNVDIN DLLPLEKRGE SGYVAARVEK RYAGETSPTE 300 PRGRKNPHRD DKDLLEEERS SKQAAVYTES TVRSDEFDIV LLHSLGNGKE ALEAYRESLK 360 NARMKTTVQN GKSKGYNGGK GRGKKHSSKK EVIDLRTLLI NCAQAVAADD CRSAIELLKQ 420 IRLHSSPFGD GNQRLAHCFA DGMEARLAGT GSQIYKALVN KKTSAADFLK AYHLYLASSP 480 FRKLSGFASN KTIMTKAGNA ARVHVIDFGI LYGFQWPTLI QRISAREGGP PKLRITGIEF 540 PQPGFRPAER IEETGRRLAD YAQTFNVPFE YHAIAKKWET IRLEDLKLEK DEFLVVNCLY 600 RFKNLPDETV LTDSSRTLVL DLIRKINPDI FIHGIVNGAY SAPFFVTRFR EVLFHFSALF 660 DMLEANVPRE SPERMLIERE IFGREALNVI ACEGWERVER PETYKQWQVR NLRARFTQIP 720 FEREVMNRAI EKVTSSYHKD FVIDENNKWL LLGWKGRTIY ALSCWKPI

Sequence ? help Back to Top

Protein Sequence Length: 768 aa Download sequence Send to blast

MDPRFNSFPT SMNGFSLENQ SLPISSNRWK NNEPRFEAIY QDQKLVNGPR FENNFVPNNV  60
GGVQSVSNDP LPTSSNKALT SDIGAEDEYN EDFDFSDTVL SYINQMLMEE DMEDKTHMLQ  120
ESLEFQAKEK SFYEALGKKY PPSPQQNLSI TYQNDEIPDE YCSGSLYNFT SNSNDSSGYL  180
IDPTVINISN DLDSSYVQGL SVCNGTYSSI SSSSSLNNIV DGFLDSPVSP LHTPDIYNDS  240
HPIWNFRKGV EEANKFLPTN IKLLDNVDIN DLLPLEKRGE SGYVAARVEK RYAGETSPTE  300
PRGRKNPHRD DKDLLEEERS SKQAAVYTES TVRSDEFDIV LLHSLGNGKE ALEAYRESLK  360
NARMKTTVQN GKSKGYNGGK GRGKKHSSKK EVIDLRTLLI NCAQAVAADD CRSAIELLKQ  420
IRLHSSPFGD GNQRLAHCFA DGMEARLAGT GSQIYKALVN KKTSAADFLK AYHLYLASSP  480
FRKLSGFASN KTIMTKAGNA ARVHVIDFGI LYGFQWPTLI QRISAREGGP PKLRITGIEF  540
PQPGFRPAER IEETGRRLAD YAQTFNVPFE YHAIAKKWET IRLEDLKLEK DEFLVVNCLY  600
RFKNLPDETV LTDSSRTLVL DLIRKINPDI FIHGIVNGAY SAPFFVTRFR EVLFHFSALF  660
DMLEANVPRE SPERMLIERE IFGREALNVI ACEGWERVER PETYKQWQVR NLRARFTQIP  720
FEREVMNRAI EKVTSSYHKD FVIDENNKWL LLGWKGRTIY ALSCWKPI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	5e-48	401	767	24	379	Protein SCARECROW
5b3h_D	5e-48	401	767	24	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009804922.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A1U7YLH5	0.0	A0A1U7YLH5_NICSY; scarecrow-like protein 9
STRING	XP_009804922.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein