PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009804802.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 220aa    MW: 25150.5 Da    PI: 6.5098
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009804802.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.37.5e-29134192159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYG+K+vk++++pr+YY+C+s gC+vkkkver+  d +++++tYeg+Hnhe
  XP_009804802.1 134 LDDGYKWRKYGKKKVKSNTNPRNYYKCSSGGCKVKKKVERDGIDSSYLITTYEGKHNHE 192
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-30120194IPR003657WRKY domain
SuperFamilySSF1182901.24E-25127194IPR003657WRKY domain
PROSITE profilePS5081129.872129194IPR003657WRKY domain
SMARTSM007741.5E-30134193IPR003657WRKY domain
PfamPF031061.4E-22135192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MFGSSTFQET SNISHQTINP NFAFSPLINM NQDHGHNMYQ DFDTSFIDQL INDGEEYSSS  60
NNSFNSTSLY SQNPFMQQEI STSTYSGNSS ASSFDATPTN IHMNENSSNK GIEKEKKAEK  120
HAIAFRTKTE LETLDDGYKW RKYGKKKVKS NTNPRNYYKC SSGGCKVKKK VERDGIDSSY  180
LITTYEGKHN HESPFIIYCD EKPTVSFHND QWTLQADSLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-25124194777Probable WRKY transcription factor 4
2lex_A8e-25124194777Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4604750.0DQ460475.1 Nicotiana tabacum cultivar Samsun NN putative WRKY transcription factor (WRKY12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804802.11e-164PREDICTED: probable WRKY transcription factor 51 isoform X2
RefseqXP_016487859.11e-164PREDICTED: probable WRKY transcription factor 51 isoform X2
TrEMBLA0A1S4BG691e-163A0A1S4BG69_TOBAC; probable WRKY transcription factor 51 isoform X2
TrEMBLA0A1U7YL531e-163A0A1U7YL53_NICSY; probable WRKY transcription factor 51 isoform X2
STRINGXP_009804801.11e-151(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.16e-14WRKY DNA-binding protein 51