PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009804663.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 374aa MW: 42052.7 Da PI: 8.4779 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.5 | 1.1e-31 | 61 | 114 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rF++ave+LGG+++AtPk +l++m++kgL ++hvkSHLQ+YR+ XP_009804663.1 61 PRLRWTPDLHLRFIHAVERLGGQDRATPKLVLQMMNIKGLNIAHVKSHLQMYRS 114 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-29 | 57 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.297 | 57 | 117 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-14 | 59 | 115 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.8E-22 | 61 | 116 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.6E-9 | 62 | 113 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MMEDSGETGC NSKTSSNSGK YEDDEENNSS KFKDGGSSSN STVEESEKKP SVRPYVRSKM 60 PRLRWTPDLH LRFIHAVERL GGQDRATPKL VLQMMNIKGL NIAHVKSHLQ MYRSKKMDDQ 120 SQGTAHHRLF MEGGDPNIYN LSQLPMFPTF HQRLNSTFRY EDASWNFHGN WTMGQRPLDR 180 SSRGFYTTLT ERIFGSNHGR EANEDLCKRN PSFISERSNL QTHEIKDEMG LSLEHESHSG 240 ELTPILSHIA AKAQARAINL QKQTPLKRKV SDCDLDLNLS LGVKPRNGSD NLRCTDFSKM 300 LPYSCPIFQR DTTFRGSNTQ SPSNNDDNDN GSSLSLSLSS PLSSSKVTRI KEDGNSNATT 360 ENARRGASTL DLTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-17 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-17 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-17 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-17 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00297 | DAP | Transfer from AT2G38300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009804663.1 | 0.0 | PREDICTED: two-component response regulator ARR10-like | ||||
Refseq | XP_016478876.1 | 0.0 | PREDICTED: two-component response regulator ORR24-like | ||||
TrEMBL | A0A1S4AQL4 | 0.0 | A0A1S4AQL4_TOBAC; two-component response regulator ORR24-like | ||||
TrEMBL | A0A1U7YNJ2 | 0.0 | A0A1U7YNJ2_NICSY; two-component response regulator ARR10-like | ||||
STRING | XP_009804663.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4382 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 5e-59 | G2-like family protein |