PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009804642.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 339aa MW: 39593.4 Da PI: 6.7836 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.4 | 9.5e-56 | 17 | 146 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeelv++yL+kk+++k+++l +vike+d+yk+ePwdL++ k+ +ee+ +wyfFs++dkky+tg+r+nratk+g+Wkatg+dk++ XP_009804642.1 17 VPPGFRFHPTDEELVDYYLRKKIASKRIDL-DVIKEIDLYKIEPWDLQElcKIGTEEQsDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAI 110 69****************************.9***************954555554445************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ k+ l+g++ktLvfykgrap+g+k+dW+mheyrle XP_009804642.1 111 YR-KHILIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 146 **.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.07E-60 | 11 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.027 | 17 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-29 | 18 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MTCLDLWRKD MNSFTHVPPG FRFHPTDEEL VDYYLRKKIA SKRIDLDVIK EIDLYKIEPW 60 DLQELCKIGT EEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YRKHILIGMR 120 KTLVFYKGRA PNGQKSDWIM HEYRLETNEN GTTQEEGWAV CRVFKKKLAT TMRREGEHES 180 LCWYNDDQVS NFMPDFESPR RFPNPYSATA YHNPQFAYTN NMQQPPNDAF LQLPQLESPK 240 VPQSYGSNMN QMVQSNSIYN THNNNYDHQA VDQVTDWRVL DKFVASQLSQ EDGCSKMETS 300 AACCSSPASE QMNLQLQNDF KSQEMASELA SSSQVDLWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-51 | 9 | 167 | 7 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-104 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009804642.1 | 0.0 | PREDICTED: NAC domain-containing protein 7 isoform X1 | ||||
Swissprot | Q9FWX2 | 1e-133 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A1U7YKN7 | 0.0 | A0A1U7YKN7_NICSY; NAC domain-containing protein 7 isoform X1 | ||||
STRING | XP_009804642.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-126 | NAC 007 |
Publications ? help Back to Top | |||
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