PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009804642.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 339aa MW: 39593.4 Da PI: 6.7836

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009804642.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.4	9.5e-56	17	146	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeelv++yL+kk+++k+++l +vike+d+yk+ePwdL++ k+ +ee+ +wyfFs++dkky+tg+r+nratk+g+Wkatg+dk++ XP_009804642.1 17 VPPGFRFHPTDEELVDYYLRKKIASKRIDL-DVIKEIDLYKIEPWDLQElcKIGTEEQsDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAI 110 69**************************.9***********954555554445******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ k+ l+g++ktLvfykgrap+g+k+dW+mheyrle XP_009804642.1 111 YR-KHILIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 146 .999*****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.07E-60	11	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.027	17	166	IPR003441	NAC domain
Pfam	PF02365	4.9E-29	18	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MTCLDLWRKD MNSFTHVPPG FRFHPTDEEL VDYYLRKKIA SKRIDLDVIK EIDLYKIEPW 60 DLQELCKIGT EEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YRKHILIGMR 120 KTLVFYKGRA PNGQKSDWIM HEYRLETNEN GTTQEEGWAV CRVFKKKLAT TMRREGEHES 180 LCWYNDDQVS NFMPDFESPR RFPNPYSATA YHNPQFAYTN NMQQPPNDAF LQLPQLESPK 240 VPQSYGSNMN QMVQSNSIYN THNNNYDHQA VDQVTDWRVL DKFVASQLSQ EDGCSKMETS 300 AACCSSPASE QMNLQLQNDF KSQEMASELA SSSQVDLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-51	9	167	7	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	1e-104	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009804642.1	0.0	PREDICTED: NAC domain-containing protein 7 isoform X1
Swissprot	Q9FWX2	1e-133	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A1U7YKN7	0.0	A0A1U7YKN7_NICSY; NAC domain-containing protein 7 isoform X1
STRING	XP_009804642.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-126	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]