PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009804478.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 597aa    MW: 64890.7 Da    PI: 6.1998
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009804478.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.5e-30333391259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  XP_009804478.1 333 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGTHNHP 391
                     7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-33317393IPR003657WRKY domain
SuperFamilySSF1182908.37E-28325393IPR003657WRKY domain
PROSITE profilePS5081129.677327393IPR003657WRKY domain
SMARTSM007741.5E-36332392IPR003657WRKY domain
PfamPF031068.2E-27334391IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MANGSGLSFD PDPIKHFLPF LQPTKLFNFQ PLLTSMESSP YKNRSPPSTI QFPVNLNCSN  60
TDHNQEEEEQ KIRPVIDEMD FFADHKKDGS NSEEPATTAN NTAVDTERKE SNTPPPELDF  120
NINTGLHLLT ANTYSDQSIV EDGLSPNSED KRTKNELAVL QAELERMNGE NRRLKDMLNQ  180
ATNNYSNLHM QMMTMIQQQQ HQENDQHDGK SEEVRQQIQS KNGHGGGGQI VPRQFMDLGL  240
AAATGSEAEE TSLSSSEGRS GRDKSRSPTN NMESGSTCGI VREDSPEKGS PGWGPNKIPR  300
LGNGSKSTDQ ATEATMRKAR VSVRARSEAP MITDGCQWRK YGQKMAKGNP CPRAYYRCTM  360
AAGCPVRKQV QRCAEDRTIL ITTYEGTHNH PLPPAAMAMA STTSSAARML LSGSMPSADG  420
LMNSNFFART LLPCSSSMAT ISASAPFPTV TLDLTQSPNP LQFPRSPNQF QVPFSNPPHN  480
MLSNPAALLP QIFNQALYNQ SKFSGLQLSQ DSEGQNPSTL PSSIHQSNHN PLADTVNALT  540
ADPNFTAALA AAITSLIGNP QQPNNGSTNN TTAITTTANN QNSSVTTNGN NTSNGNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-22319395176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804478.10.0PREDICTED: probable WRKY transcription factor 42
RefseqXP_016445607.10.0PREDICTED: probable WRKY transcription factor 42
SwissprotQ9XEC31e-140WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A1S3Y0V20.0A0A1S3Y0V2_TOBAC; probable WRKY transcription factor 42
TrEMBLA0A1U7YN040.0A0A1U7YN04_NICSY; probable WRKY transcription factor 42
STRINGXP_009804478.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9452492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-115WRKY family protein