PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009804476.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 248aa    MW: 28321.1 Da    PI: 9.129
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009804476.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.91.7e-48161431128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+++d++k++PwdLp      e+e yfFs+r+ k+ +g+r+nrat+sgyWkatg dk+++s+
  XP_009804476.1  16 LPPGFRFHPTDEELVVQYLKRKVFSFPLPA-SIIPDIDVHKSDPWDLPGD---LEQERYFFSTREMKHLKGNRSNRATNSGYWKATGLDKQIVSS 106
                     79****************************.89***************54...46799************************************9 PP

             NAM  96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++lvg+kktLvfykg+  +g +tdW+mheyrl
  XP_009804476.1 107 rgkqQQQLVGMKKTLVFYKGKPLHGCRTDWIMHEYRL 143
                     66655566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5711165IPR003441NAC domain
PROSITE profilePS5100556.03816165IPR003441NAC domain
PfamPF023653.7E-2717143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGMEKVNFVK IGGVRLPPGF RFHPTDEELV VQYLKRKVFS FPLPASIIPD IDVHKSDPWD  60
LPGDLEQERY FFSTREMKHL KGNRSNRATN SGYWKATGLD KQIVSSRGKQ QQQLVGMKKT  120
LVFYKGKPLH GCRTDWIMHE YRLANLEPNN IPTQENWVLC RIFLKKRGGS KNEDENMTQI  180
LDTTSCREGA KSKLVFYDFM NSWVPASSSV SGSSGITELS TNESDEHEDS SSCNSFTTSI  240
RRKNMALD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-4811714171NO APICAL MERISTEM PROTEIN
1ut4_B6e-4811714171NO APICAL MERISTEM PROTEIN
1ut7_A6e-4811714171NO APICAL MERISTEM PROTEIN
1ut7_B6e-4811714171NO APICAL MERISTEM PROTEIN
3swm_A5e-4811717174NAC domain-containing protein 19
3swm_B5e-4811717174NAC domain-containing protein 19
3swm_C5e-4811717174NAC domain-containing protein 19
3swm_D5e-4811717174NAC domain-containing protein 19
3swp_A5e-4811717174NAC domain-containing protein 19
3swp_B5e-4811717174NAC domain-containing protein 19
3swp_C5e-4811717174NAC domain-containing protein 19
3swp_D5e-4811717174NAC domain-containing protein 19
4dul_A6e-4811714171NAC domain-containing protein 19
4dul_B6e-4811714171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804476.10.0PREDICTED: NAC domain-containing protein 18-like
RefseqXP_016501117.10.0PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY932e-90NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A1S4CIT00.0A0A1S4CIT0_TOBAC; NAC domain-containing protein 83-like
TrEMBLA0A1U7YR910.0A0A1U7YR91_NICSY; NAC domain-containing protein 18-like
STRINGXP_009804476.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.17e-91NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]