PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009804436.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 334aa    MW: 37385.5 Da    PI: 9.9063
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009804436.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.4e-31263320359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++p+++++tYegeHnh+
  XP_009804436.1 263 DDYSWRKYGQKPIKGSPHPRAYYKCSSVrGCPARKHVERALDEPTMLIVTYEGEHNHS 320
                     99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.7E-15213259IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.9E-33248320IPR003657WRKY domain
PROSITE profilePS5081130.205256322IPR003657WRKY domain
SuperFamilySSF1182901.09E-26258320IPR003657WRKY domain
SMARTSM007742.4E-37261321IPR003657WRKY domain
PfamPF031069.1E-27263319IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAVELMMDYR NTSRNSFTIF NTKLEEKAVV QEAASGLEGV EKLLKLLSQT QSQSQQQQKQ  60
GNLSSFLKQE NSPMEIEMVA DAAVTKFKNI ISLLGRTKTG HARFRRAPTT SPPKVKKDFM  120
DSKVYCPTPI QQVPPVAYEL YDHQFFKNPR DGVVENQELV TKKSINFSYG QDISRSNSFN  180
MSALTGETES SSFKISNLSS AGKPPLSTSS SFKRKCCSSE NDLSGKCSGS SGRCHCSKRR  240
KLRLKRVERV PAISMKMSDI PPDDYSWRKY GQKPIKGSPH PRAYYKCSSV RGCPARKHVE  300
RALDEPTMLI VTYEGEHNHS LSVAETSSLI LESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-21249321273WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5388765e-79AJ538876.1 Nicotiana tabacum cDNA-AFLP-fragment BT2-M23-021.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804436.10.0PREDICTED: probable WRKY transcription factor 15
TrEMBLA0A1U7YR430.0A0A1U7YR43_NICSY; probable WRKY transcription factor 15
STRINGXP_009804436.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.15e-73WRKY DNA-binding protein 7