PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009804351.1
Common NameERF4, ERF-4, ERF5
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 282aa    MW: 31832.6 Da    PI: 5.5048
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009804351.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20137187255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka+++a+ +l+g
  XP_009804351.1 137 HYRGVRQRP-WGKFAAEIRDP---NrKGTRVWLGTFDTAIEAAKAYDRAAYELRG 187
                     8********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-32136196IPR001471AP2/ERF domain
CDDcd000185.63E-31136195No hitNo description
PfamPF008478.9E-15137187IPR001471AP2/ERF domain
SMARTSM003807.5E-36137201IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-22137197IPR016177DNA-binding domain
PROSITE profilePS5103223.986137195IPR001471AP2/ERF domain
PRINTSPR003671.2E-10138149IPR001471AP2/ERF domain
PRINTSPR003671.2E-10161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MASPQENSTT LDLIRQHLLD DNVFLEHYCS ETETTTLIYS QSSSSSESLD QSFSFEPTLN  60
YATTAQSSNL EVSTFFNNSK TEFDSFEFGT IPNVSAARSS SLKQTSFKER KPSLNIAIPV  120
KQEVVQKVEL APTEKKHYRG VRQRPWGKFA AEIRDPNRKG TRVWLGTFDT AIEAAKAYDR  180
AAYELRGSKA IVNFPLEVAN FKQEFNNEIR PLVNSSRKRV RETVNEEQLV INKEMKIEEE  240
RVPTAPLTPS SWSAIWDSGD GKGIFEVPPL SPFGAYSQLV MI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-30136198163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0162660.0AB016266.1 Nicotiana sylvestris nserf4 gene for ethylene-responsive element binding factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804351.10.0PREDICTED: ethylene-responsive transcription factor 5
SwissprotQ9LW480.0ERF5_NICSY; Ethylene-responsive transcription factor 5
TrEMBLA0A1U7YQV50.0A0A1U7YQV5_NICSY; ethylene-responsive transcription factor 5
STRINGXP_009804351.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.17e-58ERF family protein
Publications ? help Back to Top
  1. Kitajima S,Koyama T,Ohme-Takagi M,Shinshi H,Sato F
    Characterization of gene expression of NsERFs, transcription factors of basic PR genes from Nicotiana sylvestris.
    Plant Cell Physiol., 2000. 41(6): p. 817-24
    [PMID:10945353]