PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009804350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 28695.6 Da PI: 5.0513 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.2 | 4.8e-14 | 112 | 156 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k +r++lg+f+t a+++a+ kl+g XP_009804350.1 112 HYRGVRQRP-WGKFAAEIRDP---NrKETRVWLGTFDT------AYDRAAFKLRG 156 7********.**********9...6466**********......88888888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.22E-17 | 112 | 166 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.2E-8 | 112 | 150 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.413 | 112 | 164 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.15E-26 | 112 | 164 | No hit | No description |
SMART | SM00380 | 8.5E-29 | 112 | 170 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-25 | 112 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-13 | 113 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-13 | 146 | 166 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MASAQENCTL DLIRXHLLDD VAFMEYYCSE TESTTLYPQS SSSYEYLDQS FSFEPTLDYG 60 NTSQSCSLEI SSFFDNSETE LGTKPNVSAA RISSISQKQS FKERKPSLNI XHYRGVRQRP 120 WGKFAAEIRD PNRKETRVWL GTFDTAYDRA AFKLRGSKAI VNFPLEVANI KQQDDEIQSL 180 GNSSRKRVRG TEKEEQLVIN KEMKIEEERV PTAPLTPSSW SAIWDSGDGK GIFEVPLLSP 240 LSPHMAYSQL VII |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-26 | 112 | 167 | 2 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB747103 | 4e-97 | AB747103.1 Nicotiana umbratica NuERF4 mRNA for ethylene response factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009804350.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor 5 | ||||
Swissprot | Q9LW48 | 1e-125 | ERF5_NICSY; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A1U7Z093 | 0.0 | A0A1U7Z093_NICSY; LOW QUALITY PROTEIN: ethylene-responsive transcription factor 5 | ||||
STRING | XP_009804350.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA963 | 23 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 2e-52 | ERF family protein |