PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009804349.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 23087.8 Da PI: 9.3963 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.8 | 1.2e-17 | 123 | 173 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ r++lg++ t +Aa+a++ a+ k++g XP_009804349.1 123 HYRGVRRRP-WGKYAAEIRDPTRK--GSRVWLGTYETDVDAARAYDCAAFKMRG 173 8********.**********8542..4**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-31 | 122 | 181 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.02E-30 | 122 | 181 | No hit | No description |
Pfam | PF00847 | 1.1E-12 | 123 | 173 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.447 | 123 | 181 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-36 | 123 | 187 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-23 | 123 | 182 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.4E-13 | 124 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-13 | 163 | 183 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MTRTEDEELT LELISQHLLG DFTSTESFVN SLSLHHDFSF STLPDDSQPV ILTSDQKPNH 60 FNLDNNFSEF ETKPNIIRCP TSVTTSVVSN TRIFDDSSLN RTDKKVDGSD YGSSVVENGK 120 KKHYRGVRRR PWGKYAAEIR DPTRKGSRVW LGTYETDVDA ARAYDCAAFK MRGRKAILNF 180 PFDAGNLSPP ANIGRKRTKR IGHK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-28 | 122 | 182 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-28 | 120 | 182 | 2 | 64 | ATERF1 |
3gcc_A | 2e-28 | 120 | 182 | 2 | 64 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 9e-61 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009804349.1 | 1e-151 | PREDICTED: ethylene-responsive transcription factor ERF106 | ||||
Refseq | XP_016491251.1 | 1e-151 | PREDICTED: ethylene-responsive transcription factor ERF106-like | ||||
TrEMBL | A0A1S4BQV7 | 1e-150 | A0A1S4BQV7_TOBAC; ethylene-responsive transcription factor ERF106-like | ||||
TrEMBL | A0A1U7YYY1 | 1e-150 | A0A1U7YYY1_NICSY; ethylene-responsive transcription factor ERF106 | ||||
STRING | XP_009804349.1 | 1e-151 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 1e-43 | ERF family protein |