PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009804336.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 392aa    MW: 45102.9 Da    PI: 10.3717
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009804336.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.5e-151795999
                    HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      +k+g l +p  f+ ++ +g k+e     +  + +++W+vk+  ++++    +++GW eF++ +gL+ gD+++F++dg++ef   v++f++
  XP_009804336.1 17 PGFKNG-LKIPVGFL-KYlKGHKNE---HAILRRGSKQWRVKV--NGRR----FEAGWAEFAQKHGLQLGDVLIFRHDGNMEF--EVTIFDS 95
                    566666.********.554666555...46667899*******..8887....9*************************9999..9999986 PP
2B3521.3e-16156238588
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     +++++ l+++ l lp +fa+++g+ ++ +  l+++d + rsW++kl+ +++++ y++++G ++F  +n LkegD ++F+++ + 
  XP_009804336.1 156 TIRPYCLSKSFLFLPQQFAKANGLTNK-KCNLIIRDGRQRSWNLKLSSSRRPRVYIIGDGLRKFIVDNCLKEGDRIMFEVVTNG 238
                     5678999999************88754.45999**************9*******************************87643 PP
3B3551.4e-17290373491
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      +++++ +k++ l+lp +f++++g+  ++  +l+l++e+ rsW+v l   + ++++ + +GW++F  angL++gD+  F+l+++ e +
  XP_009804336.1 290 STIKPYCTKKSVLYLPLDFVKSNGLMDRK-CELILKNEEDRSWSVWL--GREGRHFGIVRGWSKFRTANGLQVGDTYKFELIKNGE-K 373
                     56789999***************777655.59***************..999999**************************99633.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-23497IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-20597IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.182896IPR003340B3 DNA binding domain
CDDcd100171.48E-15994No hitNo description
SMARTSM010196.1E-171196IPR003340B3 DNA binding domain
PfamPF023621.2E-111995IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-16150245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-17151245IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.532152248IPR003340B3 DNA binding domain
SMARTSM010191.4E-15153248IPR003340B3 DNA binding domain
PfamPF023629.3E-15156240IPR003340B3 DNA binding domain
CDDcd100178.89E-13160233No hitNo description
SuperFamilySSF1019362.55E-20282379IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-18283378IPR015300DNA-binding pseudobarrel domain
CDDcd100173.62E-16286380No hitNo description
SMARTSM010191.7E-21287381IPR003340B3 DNA binding domain
PROSITE profilePS5086313.507287381IPR003340B3 DNA binding domain
PfamPF023628.9E-16289375IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MKKVPPKKPH FFKPILPGFK NGLKIPVGFL KYLKGHKNEH AILRRGSKQW RVKVNGRRFE  60
AGWAEFAQKH GLQLGDVLIF RHDGNMEFEV TIFDSSGSVR EYLQEKVHTT VEETSKNFEF  120
EEKPSPSIKL SNKASSHAEA TSLDKLSFGQ SHFVCTIRPY CLSKSFLFLP QQFAKANGLT  180
NKKCNLIIRD GRQRSWNLKL SSSRRPRVYI IGDGLRKFIV DNCLKEGDRI MFEVVTNGET  240
PIWKFQVVTN GGTPIREFQD IRKKPSNMSP LNAQVSTTYG DDNDLPYFIS TIKPYCTKKS  300
VLYLPLDFVK SNGLMDRKCE LILKNEEDRS WSVWLGREGR HFGIVRGWSK FRTANGLQVG  360
DTYKFELIKN GEKPIAHFHC KYSEKVSKRE GQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804336.10.0PREDICTED: B3 domain-containing protein REM10-like
TrEMBLA0A1U7YQU10.0A0A1U7YQU1_NICSY; B3 domain-containing protein REM10-like
STRINGXP_009804336.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-47B3 family protein