PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009804328.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 511aa    MW: 55987.5 Da    PI: 7.4557
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009804328.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.3e-31168225260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  +++++ei+Y+g+H+h+k
  XP_009804328.1 168 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-EGQITEIVYKGSHDHPK 225
                     8****************************************.***************85 PP
2WRKY106.51.4e-33332390159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_009804328.1 332 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 390
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-26158226IPR003657WRKY domain
PROSITE profilePS5081122.435162226IPR003657WRKY domain
SuperFamilySSF1182901.96E-24164226IPR003657WRKY domain
SMARTSM007743.4E-33167225IPR003657WRKY domain
PfamPF031067.5E-24168224IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-37317392IPR003657WRKY domain
SuperFamilySSF1182901.7E-29324392IPR003657WRKY domain
PROSITE profilePS5081138.825327392IPR003657WRKY domain
SMARTSM007743.1E-39332391IPR003657WRKY domain
PfamPF031062.9E-26333390IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MNLPFCKAEP SPTTGSFSKL QAVQGSGGNA AFLLTRGYSS GNTYSERKSS CFEFKFAAGS  60
SSTSGLVAEH MISTGLNQQQ NEPLKEVQDQ SHPQLVATSS LAKHEMASSK ELSLSAPINV  120
DDSSKEESLS APINVDAMNM RGQSNTSMQV SLADHKDVSS VTAERSSDDG YNWRKYGQKL  180
VKGSEFPRSY YKCTYPNCEV KKIFERSPEG QITEIVYKGS HDHPKPQLSR RFTPGALMSI  240
QEDKFFIEDK FNANAQTGKI EPISTPVSPQ QVDADGPEGA VSQMQGTNDD MDEDDPFVKR  300
RKMDGAVDIT PVIKPIREPR VVVQTVSEVD ILDDGYRWRK YGQKVVRGNP NPRSYYKCTN  360
AGCPVRKHVE RASHDPKAVI TTYEGKHNHD VPAARSNNHE MAGSTLATGG SRIRAEETYS  420
INLDLGVGIG YGVENGNNRQ LHTVHNQVRV SRSGMMVVQP AAIAAHYGIV NGGMSRFGPI  480
DNHVQGHGFE TLPLQPSTQF PQNYGKILLG P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-38168393878Probable WRKY transcription factor 4
2lex_A7e-38168393878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111290.0AB711129.1 Solanum tuberosum StWRKY17 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804328.10.0PREDICTED: probable WRKY transcription factor 20 isoform X2
TrEMBLA0A1U7YMJ60.0A0A1U7YMJ6_NICSY; probable WRKY transcription factor 20 isoform X2
STRINGXP_009804327.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-131WRKY family protein