PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009804327.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 589aa    MW: 63955.3 Da    PI: 7.9457
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009804327.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.7e-31246303260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  +++++ei+Y+g+H+h+k
  XP_009804327.1 246 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-EGQITEIVYKGSHDHPK 303
                     8****************************************.***************85 PP
2WRKY106.21.7e-33410468159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_009804327.1 410 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 468
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-26236304IPR003657WRKY domain
PROSITE profilePS5081122.435240304IPR003657WRKY domain
SuperFamilySSF1182902.35E-24242304IPR003657WRKY domain
SMARTSM007743.4E-33245303IPR003657WRKY domain
PfamPF031069.1E-24246302IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37395470IPR003657WRKY domain
SuperFamilySSF1182902.09E-29402470IPR003657WRKY domain
PROSITE profilePS5081138.825405470IPR003657WRKY domain
SMARTSM007743.1E-39410469IPR003657WRKY domain
PfamPF031063.6E-26411468IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MENSHSKPHS RSQQQHSSSE QLRDGISAVT DGGISSGAAG SNGGAKYKLM TPAKLPISRS  60
TCITIPPGLS PSSFLESPVL LSNIKAEPSP TTGSFSKLQA VQGSGGNAAF LLTRGYSSGN  120
TYSERKSSCF EFKFAAGSSS TSGLVAEHMI STGLNQQQNE PLKEVQDQSH PQLVATSSLA  180
KHEMASSKEL SLSAPINVDD SSKEESLSAP INVDAMNMRG QSNTSMQVSL ADHKDVSSVT  240
AERSSDDGYN WRKYGQKLVK GSEFPRSYYK CTYPNCEVKK IFERSPEGQI TEIVYKGSHD  300
HPKPQLSRRF TPGALMSIQE DKFFIEDKFN ANAQTGKIEP ISTPVSPQQV DADGPEGAVS  360
QMQGTNDDMD EDDPFVKRRK MDGAVDITPV IKPIREPRVV VQTVSEVDIL DDGYRWRKYG  420
QKVVRGNPNP RSYYKCTNAG CPVRKHVERA SHDPKAVITT YEGKHNHDVP AARSNNHEMA  480
GSTLATGGSR IRAEETYSIN LDLGVGIGYG VENGNNRQLH TVHNQVRVSR SGMMVVQPAA  540
IAAHYGIVNG GMSRFGPIDN HVQGHGFETL PLQPSTQFPQ NYGKILLGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37246471878Probable WRKY transcription factor 4
2lex_A1e-37246471878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111290.0AB711129.1 Solanum tuberosum StWRKY17 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804327.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-155WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A1U7YJR70.0A0A1U7YJR7_NICSY; probable WRKY transcription factor 20 isoform X1
STRINGXP_009804327.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-157WRKY family protein