PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009804325.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 547aa    MW: 61221.1 Da    PI: 5.5694
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009804325.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.13.5e-1381775471374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L++cA+a+++++l  a++l+++l++ +s  g+p+qRl ay++e+L arla+s+s++yk+l+++e +   s+e +++++l++e++P++kf++
  XP_009804325.1 177 LKQVLIACAKAIADNNLVTAEWLMSELRTVVSVCGSPIQRLGAYMLEGLVARLASSGSSIYKSLRCKEPT---SVELMSYMHLLYEICPYFKFGY 268
                     5799*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     l aN aI++a+++e+++HiiDf+isqG QW++L++aLa+Rp+gpp++RiTg+++++s   +   +e +g+rL+++A++++vpfef++ va +++d
  XP_009804325.1 269 LSANGAIVDAMKEENTIHIIDFQISQGSQWITLIHALAARPGGPPRIRITGIDDSTSAyaRGGGIEIVGRRLSSIAASCNVPFEFHP-VAASCSD 362
                     ******************************************************998899999************************.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +e+e+L+v++gE laVn++l lh+++desv ++++rd++L++vkslsPk+v++veqe+++n+ +F+ rfle+l+yy ++f+s+++ lpr++++ri
  XP_009804325.1 363 VEIEHLKVRRGEPLAVNFALVLHHMPDESVGTQNHRDRLLRMVKSLSPKIVTLVEQESNTNTVQFFPRFLETLNYYLSIFESIDVALPRDHKQRI 457
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+reivn++acegaer+erhe le+Wr+r+ +aGF+p+pls+++++++k+ll+++++  y+++e++g+l+lgW++r Lv+ +aW+
  XP_009804325.1 458 NVEQHCLAREIVNIIACEGAERVERHELLERWRSRFLMAGFNPYPLSSSVNATIKTLLENYYQS-YTLDERNGALYLGWMNRDLVASCAWK 547
                     **************************************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.926151528IPR005202Transcription factor GRAS
PfamPF035141.2E-135177547IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MRPSQNAKDI NEFNRFYNQP VEDQESFFLP SINNPNNNQL LYADCGQQTR FSALKHNQYC  60
YVESSTGNSS ELVSDSPPVD TFFADDNSMM HQGSDSCPSD MHHSPNDTYH SSGNSSCFTS  120
DGTGLKHKLK ELETAMLGPD SESLESYNTT PLAAANQISS ESGKWVDMME MMPNGDLKQV  180
LIACAKAIAD NNLVTAEWLM SELRTVVSVC GSPIQRLGAY MLEGLVARLA SSGSSIYKSL  240
RCKEPTSVEL MSYMHLLYEI CPYFKFGYLS ANGAIVDAMK EENTIHIIDF QISQGSQWIT  300
LIHALAARPG GPPRIRITGI DDSTSAYARG GGIEIVGRRL SSIAASCNVP FEFHPVAASC  360
SDVEIEHLKV RRGEPLAVNF ALVLHHMPDE SVGTQNHRDR LLRMVKSLSP KIVTLVEQES  420
NTNTVQFFPR FLETLNYYLS IFESIDVALP RDHKQRINVE QHCLAREIVN IIACEGAERV  480
ERHELLERWR SRFLMAGFNP YPLSSSVNAT IKTLLENYYQ SYTLDERNGA LYLGWMNRDL  540
VASCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-6718454625377Protein SCARECROW
5b3h_D6e-6718454625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804325.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_009804326.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_016487146.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1S4BEA60.0A0A1S4BEA6_TOBAC; scarecrow-like transcription factor PAT1
TrEMBLA0A1U7YQT40.0A0A1U7YQT4_NICSY; scarecrow-like transcription factor PAT1
STRINGXP_009804325.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]