PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009804259.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 377aa MW: 42721.6 Da PI: 6.0705 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 9.8e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++++ G+g +W + ++++g++R++k+c++rw++yl XP_009804259.1 14 KGPWSPEEDTKLKAYIEENGTGnNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.8 | 2.1e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ XP_009804259.1 69 GGFTEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.304 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.05E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.45E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.109 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.12E-8 | 71 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0035987 | Biological Process | endodermal cell differentiation | ||||
GO:0045597 | Biological Process | positive regulation of cell differentiation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000021 | Biological Process | regulation of ion homeostasis | ||||
GO:2000067 | Biological Process | regulation of root morphogenesis | ||||
GO:0048226 | Cellular Component | Casparian strip | ||||
GO:0000975 | Molecular Function | regulatory region DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MGRAPCCDKN NVKKGPWSPE EDTKLKAYIE ENGTGNNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FTEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 RKQSQMNRLL LASSGQDLKE TNGLEENSLL QNLSNSALER LQLHMQLQTL QNPLSFYNNP 180 TLWPKLTPLQ QKMIQTLQPN GLNENQSPIF APINPSDHNQ AHELGQKVVI NEFANTMTNF 240 KANEVEKSNM NNVISSSDNT PIESNNQRNA LDKNIGQENT REIQIQIQGV QGFTQAEIDD 300 LILNKGIGFN TPSENHQIAE FDCFKEMDDG SRDNLAWWSN EFDTNTASSS NSWGSSSNIL 360 QQTEGVYQDY AQGYNLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-23 | 14 | 117 | 7 | 108 | B-MYB |
1h8a_C | 1e-22 | 14 | 117 | 27 | 128 | MYB TRANSFORMING PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 1e-148 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. | |||
GenBank | HG975519 | 1e-148 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009804259.1 | 0.0 | PREDICTED: myb-related protein 306 | ||||
Refseq | XP_016494687.1 | 0.0 | PREDICTED: transcription factor MYB36-like | ||||
Swissprot | Q9FKL2 | 1e-101 | MYB36_ARATH; Transcription factor MYB36 | ||||
TrEMBL | A0A1S4C0K8 | 0.0 | A0A1S4C0K8_TOBAC; transcription factor MYB36-like | ||||
TrEMBL | A0A1U7YYN3 | 0.0 | A0A1U7YYN3_NICSY; myb-related protein 306 | ||||
STRING | XP_009804259.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 8e-88 | myb domain protein 36 |
Publications ? help Back to Top | |||
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