PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009804256.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 371aa    MW: 41583.9 Da    PI: 4.7165
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009804256.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-102973371055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     rrRR++iN+++  L+ l+P+      +K++ +++Le+Av Y+k Lq
  XP_009804256.1 297 RRRREKINERLRILQNLVPNG-----TKVDISTMLEEAVTYVKFLQ 337
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.046287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-14289353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-13292347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-11293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.85E-11296341No hitNo description
PfamPF000101.6E-7297337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEQIGAFFDE EWESLTKLFS STETADFMLQ LHGDQGNLFA INAHENAGSS YENGRPQSAF  60
YQIGDEQHEA NTNFQYFSHE SSITSCGSDG MFFPNNPSRD IDHDVNNQLL AISNQTDDQS  120
IDFFVMDNKN NLENLSINFP DDTNDMDSPL SKEEMVCDQL DNVGISPVSN KEMQLKRKFD  180
KIALQSSSKE QKLKEELPEN PKKKSRGSAQ DVQKNKKKAQ PKGKKNQKIT QINNEEGEDQ  240
GTNNAAIQNG QSSSCCSSED DSNASQELNG GAISSKSKGK SRASRGAATD PQSLYARRRR  300
EKINERLRIL QNLVPNGTKV DISTMLEEAV TYVKFLQLQI KLLSSDELWM YAPIAYHGMD  360
IGLYQNMMPS L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296301RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804256.10.0PREDICTED: transcription factor bHLH85-like
RefseqXP_016450712.10.0PREDICTED: transcription factor bHLH85-like
TrEMBLA0A1S3YFA40.0A0A1S3YFA4_TOBAC; transcription factor bHLH85-like
TrEMBLA0A1U7YQL00.0A0A1U7YQL0_NICSY; transcription factor bHLH85-like
STRINGXP_009804256.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.14e-33root hair defective 6-like 4