PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009804067.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 524aa MW: 58178.4 Da PI: 5.0503 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 417.4 | 1.2e-127 | 155 | 524 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +elLl+cAeavs+ + +a+ l++ l++ +s +g+pmqRl ay++e+++arl++s+s +yk+l+++e + se l++++++++++P++kf++ XP_009804067.1 155 KELLLACAEAVSDAYFPAAEVLMNVLEQKVSISGEPMQRLSAYMLEGIRARLFSSGSIIYKKLKCKEPT---NSELLSYMQVLYHICPYYKFAYT 246 689*****************************************************************9...89********************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 aN I ea+ +e+ +HiiDf+i qG QW+ L+q+La Rp+gpps+RiTgv++++s + l+ +ge+Lak+Ae+++vpfefn+ +a + +++ XP_009804067.1 247 SANVVIDEAMTNENGIHIIDFQIAQGSQWMFLIQSLARRPGGPPSVRITGVDDSQSAhaRGGGLQLVGEKLAKVAESCRVPFEFNA-AAISGSEV 340 *****************************************************9988889999***********************.8999**** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ele+L +++gEalaVn+ + lh+++desvs+ ++rd++L+lvkslsPk+v++veqe+++n++ F rf e+l+yy+a+f+s++a+ pr++++ri+ XP_009804067.1 341 ELENLYIRHGEALAVNFPYILHHMPDESVSTVNHRDRLLRLVKSLSPKIVTLVEQESNTNTAAFIPRFRETLDYYTAMFESIDAGRPRDDKQRIS 435 *********************************************************************************************** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 E+++++r++vn++acega+r+erhe ++kW++rl++aGF+p pls ++ + ++ +l+ ++s+ yr+ e++g+l+lgWk+r+L ++SaWr XP_009804067.1 436 AEEHCVARDVVNIIACEGADRVERHELFGKWSMRLKMAGFTPCPLSPSVGEAINDMLKDYSSN-YRIAENKGALYLGWKNRALATTSAWR 524 *************************************************************77.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.411 | 128 | 505 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.2E-125 | 155 | 524 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MQASQRPMEK VEQYYSPYYV FNNNSNDTSS SGTQFSFQSQ NEQFFTLDSL PAAGYVIYDS 60 PPAVSVSSNW SPFSPQYSQS TISDQHHSSD NTYGSPLSGC SGVDGVLSEM ANKLLGPESD 120 IDDSSSCSFN DVVSEPSSLT KWNRVLEIAS SLDVKELLLA CAEAVSDAYF PAAEVLMNVL 180 EQKVSISGEP MQRLSAYMLE GIRARLFSSG SIIYKKLKCK EPTNSELLSY MQVLYHICPY 240 YKFAYTSANV VIDEAMTNEN GIHIIDFQIA QGSQWMFLIQ SLARRPGGPP SVRITGVDDS 300 QSAHARGGGL QLVGEKLAKV AESCRVPFEF NAAAISGSEV ELENLYIRHG EALAVNFPYI 360 LHHMPDESVS TVNHRDRLLR LVKSLSPKIV TLVEQESNTN TAAFIPRFRE TLDYYTAMFE 420 SIDAGRPRDD KQRISAEEHC VARDVVNIIA CEGADRVERH ELFGKWSMRL KMAGFTPCPL 480 SPSVGEAIND MLKDYSSNYR IAENKGALYL GWKNRALATT SAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-57 | 161 | 523 | 26 | 378 | Protein SCARECROW |
5b3h_A | 1e-57 | 161 | 523 | 25 | 377 | Protein SCARECROW |
5b3h_D | 1e-57 | 161 | 523 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009804066.1 | 0.0 | PREDICTED: scarecrow-like protein 13 | ||||
Refseq | XP_009804067.1 | 0.0 | PREDICTED: scarecrow-like protein 13 | ||||
Swissprot | Q9M0M5 | 0.0 | SCL13_ARATH; Scarecrow-like protein 13 | ||||
TrEMBL | A0A1U7YIZ3 | 0.0 | A0A1U7YIZ3_NICSY; scarecrow-like protein 13 | ||||
STRING | XP_009804066.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17230.1 | 0.0 | SCARECROW-like 13 |