PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009803902.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 278aa    MW: 31769.9 Da    PI: 5.5979
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009803902.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.2e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l +++++ G g+W ++ ++ g++R++k+c++rw +yl
   XP_009803902.1 15 KGPWTAEEDEKLMEYIQENGHGNWQLVHKRAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP

2Myb_DNA-binding51.62.2e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE++ +++ +  lG++ W++Ia++++ gRt++++k++w+++l
   XP_009803902.1  68 RGGFSEEEEQMIINFHSVLGNK-WSRIASHLP-GRTDNEIKNFWNTHL 113
                      788*******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.2981066IPR017930Myb domain
SuperFamilySSF466891.01E-3012109IPR009057Homeodomain-like
SMARTSM007172.1E-141464IPR001005SANT/Myb domain
PfamPF002495.1E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-231669IPR009057Homeodomain-like
CDDcd001679.35E-121762No hitNo description
PROSITE profilePS5129420.98267117IPR017930Myb domain
SMARTSM007173.6E-1667115IPR001005SANT/Myb domain
PfamPF002494.7E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2570117IPR009057Homeodomain-like
CDDcd001672.84E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRYPCCKLD NDLKKGPWTA EEDEKLMEYI QENGHGNWQL VHKRAGLNRC GKSCRLRWTN  60
YLRLDIKRGG FSEEEEQMII NFHSVLGNKW SRIASHLPGR TDNEIKNFWN THLKKKLLKS  120
GIDPVTHQPI TDPTLLLSLC NLINPLESAL RLQSEAELTE MAKIHLIQNI IQVLNTPPFQ  180
TFQENLPMQQ LYNNVSPYDI LTNVTSNIDG PSPNSNSLDG FGKVFNVDSD YSLPSLVPAT  240
HEKSPFDQNI DVPSYGFLDA WEKGLDDEAN NFFWQGII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30121174108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803902.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB39-like
SwissprotQ9S9Z24e-69MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A1U7YIH10.0A0A1U7YIH1_NICSY; LOW QUALITY PROTEIN: transcription factor MYB39-like
STRINGXP_009803902.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-77myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]