PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009803902.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 278aa MW: 31769.9 Da PI: 5.5979 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.3 | 7.2e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l +++++ G g+W ++ ++ g++R++k+c++rw +yl XP_009803902.1 15 KGPWTAEEDEKLMEYIQENGHGNWQLVHKRAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.2e-16 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++ +++ + lG++ W++Ia++++ gRt++++k++w+++l XP_009803902.1 68 RGGFSEEEEQMIINFHSVLGNK-WSRIASHLP-GRTDNEIKNFWNTHL 113 788*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.298 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-30 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.35E-12 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.982 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.84E-12 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGRYPCCKLD NDLKKGPWTA EEDEKLMEYI QENGHGNWQL VHKRAGLNRC GKSCRLRWTN 60 YLRLDIKRGG FSEEEEQMII NFHSVLGNKW SRIASHLPGR TDNEIKNFWN THLKKKLLKS 120 GIDPVTHQPI TDPTLLLSLC NLINPLESAL RLQSEAELTE MAKIHLIQNI IQVLNTPPFQ 180 TFQENLPMQQ LYNNVSPYDI LTNVTSNIDG PSPNSNSLDG FGKVFNVDSD YSLPSLVPAT 240 HEKSPFDQNI DVPSYGFLDA WEKGLDDEAN NFFWQGII |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-30 | 12 | 117 | 4 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009803902.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB39-like | ||||
Swissprot | Q9S9Z2 | 4e-69 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A1U7YIH1 | 0.0 | A0A1U7YIH1_NICSY; LOW QUALITY PROTEIN: transcription factor MYB39-like | ||||
STRING | XP_009803902.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 1e-77 | myb domain protein 9 |
Publications ? help Back to Top | |||
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