PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009803830.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 296aa    MW: 32825.2 Da    PI: 9.3769
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009803830.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.24.1e-14213271259
                     XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHH CS
          bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk.aLkkeleelkkevakl 59 
                     ++ +r+rr++kNRe+A rsR+RK+a++ eLe  + +Le+eN+ +Lk++ e+ + ++++l
  XP_009803830.1 213 AAMQRQRRMIKNRESAARSRERKQAYQVELESMAVKLEEENElMLKEKEERTRAHYKQL 271
                     5789*************************************944555666666666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.8E-9212277IPR004827Basic-leucine zipper domain
PfamPF001702.0E-12213271IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.071214265IPR004827Basic-leucine zipper domain
CDDcd147071.70E-15216262No hitNo description
SuperFamilySSF579597.39E-9216266No hitNo description
Gene3DG3DSA:1.20.5.1703.8E-11217270No hitNo description
PROSITE patternPS000360219234IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MASMKLMTSS ASRNSDRRKS SASSSSSSST MPHDLQFSNN GSNNSSSNLE ATSVTPDVIF  60
RNVYGESHNN ALLNTEITLL DAAGAITPIS DSETPTATAV TASEVPPARK TVDDVWREIV  120
EGKREKQRAA VVAGCKEEMM TLEDFLVKAG AVEEEAVAHV QGPEVKVELG TERLSGGIFA  180
FDNSTPYMAA PRQSVPGFGR GKRKAVLEPL DKAAMQRQRR MIKNRESAAR SRERKQAYQV  240
ELESMAVKLE EENELMLKEK EERTRAHYKQ LIEKVIPVVD KRKPPRVLRR VCSMQW
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803830.10.0PREDICTED: G-box-binding factor 4-like
RefseqXP_016491915.10.0PREDICTED: G-box-binding factor 4-like
SwissprotP427777e-46GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A1S4BSQ00.0A0A1S4BSQ0_TOBAC; G-box-binding factor 4-like
TrEMBLA0A1U7YYN10.0A0A1U7YYN1_NICSY; G-box-binding factor 4-like
STRINGXP_009803830.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27712452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.15e-41bZIP family protein