PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009803754.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 713aa MW: 78562.6 Da PI: 5.5474 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 438.5 | 5e-134 | 347 | 712 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsPilk 92 lv+lLl+cAeavs++d la+++L +l+ ++p gd+mqR+a++fteAL arla + +++++a +p + + ns e l++++++++++P++k XP_009803754.1 347 LVHLLLACAEAVSKEDYMLARRYLHHLNRVVTPIGDSMQRVASCFTEALTARLAAtlaTKPSTSSAPKPFNPFPPNSLEILKIYQILYQACPYVK 441 68***************************************************98443456677777666666778******************* PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187 f+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+ s e+++etg+ L+++A++l+vpfef++ v ++le XP_009803754.1 442 FAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----SPEAVRETGRCLTELAHSLHVPFEFHP-VGEQLE 531 *********************************************************....9**************************.7***** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 dl++++++ + gEalaVn+v +lhr++ +++ ++L ++++ P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s++r XP_009803754.1 532 DLKPHMFNRRIGEALAVNSVNRLHRVP------VNCIGNLLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPADSSQR 620 **************************9......444557******************************************************** PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +k+E+ ++++ei+n+v+cegaer+ rhe+lekWr+ +e GFk vpls +a++q k ll ++ dgy++ e++g+l+lgW+dr+++++SaWr XP_009803754.1 621 AKLEQYIFAPEIMNIVSCEGAERVVRHERLEKWRRLMEGKGFKGVPLSANAVTQSKILLGLYSCDGYKLTEDNGCLLLGWQDRAILAASAWR 712 *******************************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.613 | 321 | 692 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-131 | 347 | 712 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 713 aa Download sequence Send to blast |
MSVMNNSLSV SMGSLKNDIK SEVGSLKSEI GSFKSENSYS KLPLDESSLA SSESKKVTPV 60 TSDFELNCGS LAPTSLSFPA LKFEVDDDVE IQSPDNSIWE SFFADQLEGD FMISSPVRNH 120 PSPQPASSFS TTTHSNNNNN NNNYNIYAHH QGIHGQSMMM CSPPRSPLGP NYHSSNKGKG 180 LSPLQKVFNS PNNQFMQIES FKLPALESFL DDDYDKEEDL ASSYLALKVS GSGVAGSSSE 240 SFDALSVVPD LLECLALPNS SSNGPGSFMG SLLGDTSAVP DDEIFQTGSI APLSQQLQQE 300 RQHEKQQKQR PITHAQPPMT QQQHTQIINH NLVVAAPDQE QDSGLQLVHL LLACAEAVSK 360 EDYMLARRYL HHLNRVVTPI GDSMQRVASC FTEALTARLA ATLATKPSTS SAPKPFNPFP 420 PNSLEILKIY QILYQACPYV KFAHFTANQA IFEAFEAEER VHVIDLDILQ GYQWPAFMQA 480 LAARPGGAPF LRITGVGPSP EAVRETGRCL TELAHSLHVP FEFHPVGEQL EDLKPHMFNR 540 RIGEALAVNS VNRLHRVPVN CIGNLLAMIR DQAPNIVTIV EQEASHNGPY FLGRFLEALH 600 YYSAIFDSLD ATFPADSSQR AKLEQYIFAP EIMNIVSCEG AERVVRHERL EKWRRLMEGK 660 GFKGVPLSAN AVTQSKILLG LYSCDGYKLT EDNGCLLLGW QDRAILAASA WRC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-97 | 354 | 711 | 26 | 378 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009803754.1 | 0.0 | PREDICTED: DELLA protein RGL2-like | ||||
Refseq | XP_016497576.1 | 0.0 | PREDICTED: DELLA protein RGL2-like | ||||
Swissprot | G7L166 | 0.0 | RAM1_MEDTR; GRAS family protein RAM1 | ||||
TrEMBL | A0A1S4C8Z1 | 0.0 | A0A1S4C8Z1_TOBAC; DELLA protein RGL2-like | ||||
TrEMBL | A0A1U7YX55 | 0.0 | A0A1U7YX55_NICSY; DELLA protein RGL2-like | ||||
STRING | XP_009803754.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12566 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66350.1 | 2e-97 | RGA-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|