PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009803738.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 303aa MW: 33309.8 Da PI: 8.5593

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009803738.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	199.4	1.1e-61	101	236	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 +g+++CqdCGnqakkdC h+RCRtCC+ rgf+C+thvkstWvpaa+rrerqqq + +++kr+r++ + s+l+ t+l++++s+ XP_009803738.1 101 QGNVNCQDCGNQAKKDCPHSRCRTCCRGRGFQCQTHVKSTWVPAARRRERQQQFSE-----------NHPKRPRDN--ISGSSLAYTRLPTTSSE 182 7899********************************************988654...........578999997..67889999999998766 PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s++P+evss+avfrcv+vs+v+d+e+++aYqtav+igGh+fkG+LydqG+++ XP_009803738.1 183 ---VGSHFPPEVSSPAVFRCVKVSGVEDAEQHYAYQTAVNIGGHIFKGMLYDQGPDQ 236 ...6678**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.1E-57	103	235	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.3E-25	105	147	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.3E-27	186	234	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MSWFFGLGGG KEQEREELAT NNLLLFKNEE IYNKGFKLWQ QLQQQRQQQN HQNQEQDHVD 60 FSICVGPASS SKPSNNSSNS CRSLGFRVMN MRGGGSSSGD QGNVNCQDCG NQAKKDCPHS 120 RCRTCCRGRG FQCQTHVKST WVPAARRRER QQQFSENHPK RPRDNISGSS LAYTRLPTTS 180 SEVGSHFPPE VSSPAVFRCV KVSGVEDAEQ HYAYQTAVNI GGHIFKGMLY DQGPDQSRYS 240 SSGGGAGESS SQPLNFIAGA TAAASSQQQQ GVSIAMFDPA SIYPNHQLSA FMAGTQFFPP 300 PRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:20706774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803738.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like isoform X2
Swissprot	Q9FXH7	5e-74	SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBL	A0A1U7YKT9	0.0	A0A1U7YKT9_NICSY; protein SHI RELATED SEQUENCE 5-like isoform X2
STRING	XP_009628417.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	2e-66	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]