PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009803667.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 283aa    MW: 31364.6 Da    PI: 5.4345
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009803667.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20154203255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a+++a+ +++g
  XP_009803667.1 154 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFNTAEDAARAYDKAAIEFRG 203
                     59*******.**********94....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.6E-32154211IPR001471AP2/ERF domain
CDDcd000182.76E-34154210No hitNo description
SuperFamilySSF541712.48E-22154211IPR016177DNA-binding domain
PROSITE profilePS5103224.829154211IPR001471AP2/ERF domain
SMARTSM003805.1E-38154217IPR001471AP2/ERF domain
PfamPF008475.5E-14154203IPR001471AP2/ERF domain
PRINTSPR003677.3E-12155166IPR001471AP2/ERF domain
PRINTSPR003677.3E-12177193IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MQRSNKRFRE DGTSNTDQNN QQFPHFPRLT GEEEYSVMVS ALKNVINGSI PMENTQQFYS  60
FSPFQYCTAT STATTVTAYS SPSNSMSTIE QGNVVSPILG VPAEQEPCPF CRIKGCLGCD  120
IFGTTSNAAA VVAADDNKKN STTTTAVTKK KKKNYRGVRQ RPWGKWAAEI RDPRKAARVW  180
LGTFNTAEDA ARAYDKAAIE FRGPRAKLNF SFADYTEIQE QQSASSSSPQ QLPEPQLQQG  240
NNTEFGNEIW DQLMGDNEIQ DWLTMMNFNG DSSDSTGGNV HSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-24153210159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740210.0AB274021.1 Nicotiana tabacum WRAF1 mRNA for wound-responsive AP2 like factor 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312081.10.0ethylene-responsive transcription factor ERF109-like
RefseqXP_009803667.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A1U7YHT40.0A0A1U7YHT4_NICSY; ethylene-responsive transcription factor ERF109-like
TrEMBLA4F2480.0A4F248_TOBAC; Wound-responsive AP2 like factor 1
STRINGXP_009803667.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.14e-27redox responsive transcription factor 1