PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009803598.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 1685aa MW: 184554 Da PI: 6.6123 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.5 | 3.6e-09 | 815 | 856 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e+++d + +G++ +++Ia+ + ++t +c+++++k XP_009803598.1 815 PWTSEEREIFIDKLATFGKD-FRKIASFLD-HKTTADCIEFYYK 856 8*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 30.2 | 1.1e-09 | 1033 | 1073 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++++av +G++ + ++r++ +R+++qck ++ XP_009803598.1 1033 DWTDEEKSIFIQAVSAYGKD-FVMVSRCVR-TRSREQCKIFFS 1073 5*****************99.*********.********8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.79E-14 | 798 | 859 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-5 | 806 | 857 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 16.417 | 811 | 862 | IPR017884 | SANT domain |
SMART | SM00717 | 1.8E-9 | 812 | 860 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-6 | 814 | 856 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 11.71 | 1029 | 1080 | IPR017884 | SANT domain |
SMART | SM00717 | 8.2E-9 | 1030 | 1078 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.28E-10 | 1032 | 1083 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-5 | 1033 | 1074 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.7E-7 | 1033 | 1072 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.18E-7 | 1034 | 1072 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1685 aa Download sequence Send to blast |
MPSEPLPWDR KDFFKERRQH DRSELLRGGP RWREPPPRHH YGSSRWVPAD FRSTRGAPPG 60 HGKQGSWHMY PEESGHGFMP SRSNEKIVED ESCRQSRGDG GGKYGSRSSS RENRSFGGQR 120 DWRRGGGLSW EAAASPSGPV RQHDTATNDQ RPADVVVPHN SEHVNNTWDQ SHSRDQHNKS 180 GSANGTASTG QRFERGNSLG SIEWRPLKWA RSGSLSSRGS LSHSGSSKSM GVDSNETKPE 240 LQPGNSKALQ SPTGDATACV TSAAPSEETS SRKKPRLGWG EGLAKYEKKK VPEDSAAKVG 300 ACISGDSVEP GHPHPLNTAD KSPRVAVSLD CPSPTTPSSV ACSSSPGLED KQPVKATNID 360 QDVGNLCGSP SIISQYHSEE FAFNLENFDL SQISNLNSSI NELLQSEDSS SVDSGFMRST 420 AVNKLLIWKN DISKVLEKTE VEIDSLENEL KTLISEPEYT QLVPSGSCSP RKECNSNSHE 480 DQGTTNIASR PAPLQVVIPE DVIGEEGTNI QEKEHAEVKV EDIDSPGSAT SKFVELPSEK 540 DVAPIGAMKH VGGMLISDDS KSLSNNVKVC SSTEDKAKSR SSDVKVCSFS EDMARDTLAC 600 VESFQLTTRC SRPVSDGSLN CGKDALYNLI LAANKDTAYR AFDVFKNLLP AGKCSFDFSS 660 VSSLQIDHAV KERFARRKQF KQFKEKIIAL KFRVHQHLWK EDMRMLSARK FRAKSQKKFD 720 FSLRPVQIGH QKHRSTVRSR FSTTVGNSSL VPSLEVLNFA SRLLSDLRAK VYRNTLRMPA 780 LVLDQKERAM SRFISKNSLV EDPCAVEKER SVINPWTSEE REIFIDKLAT FGKDFRKIAS 840 FLDHKTTADC IEFYYKNHKS DCFERTKRKP DYSKQAKVCS ANTYLVASSG KRWNREANSV 900 SLDILGAASA IAANVEDSIE IQQKCTSKYS VRMVTEHKTS RHNELERSNS LDVCHSERER 960 VAADVLTGIC GSLSSEAMSS CITSSIDPAE GNQEWKHQKV GSSTRLPLTP EVTQSVDDET 1020 CSDESCGEMD PTDWTDEEKS IFIQAVSAYG KDFVMVSRCV RTRSREQCKI FFSKARKCLG 1080 LDEILPGPGN LVRQDVNGGN DPDACVMETE LFCNEKSSLK LKELSDLCVS AGISKPDMTS 1140 SDDKDGAGEL DSVDTELVSK NSVQVNCHVD KQRVEFNRHC EIQGACTENG LGDENMVTVS 1200 QEGGVQIDGD VSENGPDDIL CANKVSGEHS GEEIKGVVPE HDLKNRKADS AEVSRSNFSL 1260 EDTKSNMVSS GSNSHLAAVR GAELCPLNGS QNMTLLESDS ECKPGVNYSG SNISVQRKKM 1320 PRASNAVYLS ELELENVGDQ QRENATQSAE QPLPSTSQIA HIESRQILGS YSLGESATKE 1380 SGDGCSTSAA LQEIQKVGKN LRSDTTGFFL QRCNGTNREQ TVGGSSSNVD KPCRNGDVKL 1440 FGQILSKPCP QANTSSNAQQ SDSSNQQLKV CSNMSSASHS LDGNSATAKF ERNNFLGSEN 1500 HQVRSFGFWD GNRIQTGFSS LPDSAILLAK YPAAFGNYAI SSSKVEQQPP LHGVVKTATD 1560 RSLNGVPVFP TRDVSSNNGV AAADYQVYRS LDVQPFTIEM KQRQDAVFSE MQRRNGFDVV 1620 SSMQQQARGV VVGRGGILVG GQCTGVSDPV AAIKMHYAKA EQFSGQATSI IREDDYWLSK 1680 GDISR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 5e-14 | 773 | 864 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 5e-14 | 773 | 864 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009803598.1 | 0.0 | PREDICTED: uncharacterized protein LOC104248943 | ||||
Refseq | XP_016486022.1 | 0.0 | PREDICTED: uncharacterized protein LOC107806392 | ||||
TrEMBL | A0A1S4BAX1 | 0.0 | A0A1S4BAX1_TOBAC; uncharacterized protein LOC107806392 | ||||
TrEMBL | A0A1U7YKF2 | 0.0 | A0A1U7YKF2_NICSY; uncharacterized protein LOC104248943 | ||||
STRING | XP_009803598.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5904 | 23 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-156 | MYB family protein |