PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009803519.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 290aa MW: 32137.2 Da PI: 6.1596

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009803519.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.7	1.6e-10	41	83	3	45
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + k rr+++NReAAr+sR+RKka++++Le +L++ ++L XP_009803519.1 41 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQEL 83 67889*************************9888888777655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.4E-8	37	86	No hit	No description
SMART	SM00338	7.0E-9	39	102	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.461	41	85	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-7	42	84	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.56E-22	43	95	No hit	No description
SuperFamily	SSF57959	3.0E-7	43	86	No hit	No description
PROSITE pattern	PS00036	0	46	61	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-30	126	200	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MMAEISPSTS TDADTDDKNL RFMNSQPVAS VTSDGSDKPR DQKTLRRLAQ NREAARKSRL 60 RKKAYVQQLE SSRMKLTQLE QELQRARQQG IFISSSGDQS QSKTGNGALA FDVEYARWLE 120 EHNRRITELR GAVSSHAGDG ELRIIVDGIL AHYDDIFRIK GDAAKADVFH ILSGMWKTPA 180 ERCFLWLGGF RSSELLKLLI NQLEPLTEQQ LLAINNLQES SQQAEDALSQ GMEALQQSLA 240 ETLAGSLGPS GSSGNVANYM GQMAMAMGKL GTLEGFIRQY WFEMSLNGAT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803519.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like isoform X3
Swissprot	Q41558	1e-151	HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBL	A0A1U7YWG6	0.0	A0A1U7YWG6_NICSY; transcription factor HBP-1b(C38)-like isoform X3
STRING	XP_009803516.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.5	1e-130	TGACG motif-binding factor 6