PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009803516.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 327aa    MW: 36458.2 Da    PI: 9.3698
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009803516.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.51.9e-104183345
                    XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                    + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  XP_009803516.1 41 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQEL 83
                    67889*************************9888888777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-83786No hitNo description
SMARTSM003387.0E-939102IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4614185IPR004827Basic-leucine zipper domain
PfamPF001701.4E-74284IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.63E-74386No hitNo description
PROSITE patternPS0003604661IPR004827Basic-leucine zipper domain
PfamPF141441.3E-30126200IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MMAEISPSTS TDADTDDKNL RFMNSQPVAS VTSDGSDKPR DQKTLRRLAQ NREAARKSRL  60
RKKAYVQQLE SSRMKLTQLE QELQRARQQG IFISSSGDQS QSKTGNGALA FDVEYARWLE  120
EHNRRITELR GAVSSHAGDG ELRIIVDGIL AHYDDIFRIK GDAAKADVFH ILSGMWKTPA  180
ERCFLWLGGF RSSELLKLLI NQLEPLTEQQ LLAINNLQES SQQAEDALSQ GMEALQQSLA  240
ETLAGSLGPS GSSGNVANYM GQMAMAMGKL GTLEGFIRQA DNLRQQTLQQ MHRVLTTRQS  300
ARALLAISDY FSRLRALSSL WLARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0314870.0AF031487.1 Nicotiana tabacum bZIP transcription factor (TGA2.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803516.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X1
RefseqXP_009803517.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X1
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A1U7YHD80.0A0A1U7YHD8_NICSY; transcription factor HBP-1b(C38)-like isoform X1
STRINGXP_009803516.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-150bZIP family protein