PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009803487.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 714aa MW: 78354.2 Da PI: 6.3055 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 279.5 | 1e-85 | 353 | 713 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++++++ e + +g++++aq +Larl+++ sp g+p++R+a+yf+eAL+ + + ++ ++pp+ ++ + + ++ a+k+fsevsP+++f ++t XP_009803487.1 353 DQIFQASELLLAGHFSNAQMILARLNQQLSPIGKPFKRAAFYFKEALQLPFLL--PCTSTSFPPRIPTPFDCVLKMDAYKAFSEVSPLIQFMNFT 445 57899999999*************************************99998..7777889****9999************************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle..dle 190 NqaIlea+ ++++HiiDfdi+ G+QW +++q+L s ++++ sl+iT+++sp+++++ e+ ++e L+ fA+ +g++fe +v+ ++++ + XP_009803487.1 446 SNQAILEALGDAKQIHIIDFDIGCGAQWSSFMQELPSSNRKATSLKITAFVSPSTHHSVEIGIMHESLTLFANDVGIRFELEVINLDSFDpkTYP 540 ***********************************************************************************977765411567 PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerik 284 l++Lr ++ Ea+a+n+ + + + +++L+++k+lsPkvvv e+ +++++ ++ +++l+al+yy l+ s+ +a+ + + +k XP_009803487.1 541 LSSLRSSECEAIAINFPIWSISSC--LFA----FPSLLHCMKQLSPKVVVSLERGCERTELPLKHHLLHALQYYEILLASIdAAN--LTPDVGKK 627 8999************99555444..344....456*********************************************5555..4778999* PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Er ll+ +i+n+v + ++ ++ Wr+ + +aGF+pv++s+ ++ qa++l++++++ g++ve+++ slvl+Wk+++L+s+ +Wr XP_009803487.1 628 IERSLLQSSIENMVLGRLRS----PNRIPPWRNLFASAGFSPVAFSNLTEIQAECLVKRTQVGGFHVEKRQTSLVLCWKQQELLSALSWR 713 ***************99988....999**************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.622 | 325 | 693 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.5E-83 | 353 | 713 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 714 aa Download sequence Send to blast |
MIVIPQSNNL AGAKGVLGVS SYVPSISSSP EAAICNKGLN FTRNESVSVL DARSPSPSAS 60 SSSCSYGGQY AGNNGVPGAG AGKIDGRKEE LVTELQPFSF ELEPEKFNLG FGDLDNLLPE 120 LAGSDQTIFR WISGDMEDPS VSLKQLLQGG NANADLGCGV SVAGSFACTD NISFSSSDIS 180 LDANIEKIGS VVIDSNNRPN NNFENPNVNL LAKSLPPTLS FHEQQSEEKP QISCPQIMTN 240 QHQFQNSAYV NLFGSSSYNM NQEQPPPKRH NSGILGSSLG FLLPKVPFFN PSGDLLLRKQ 300 PLGHMQQQVN LLPPHQFQPT SLFVPKLEAA GGDGNGNLMV PRHQQQEQQF IYDQIFQASE 360 LLLAGHFSNA QMILARLNQQ LSPIGKPFKR AAFYFKEALQ LPFLLPCTST SFPPRIPTPF 420 DCVLKMDAYK AFSEVSPLIQ FMNFTSNQAI LEALGDAKQI HIIDFDIGCG AQWSSFMQEL 480 PSSNRKATSL KITAFVSPST HHSVEIGIMH ESLTLFANDV GIRFELEVIN LDSFDPKTYP 540 LSSLRSSECE AIAINFPIWS ISSCLFAFPS LLHCMKQLSP KVVVSLERGC ERTELPLKHH 600 LLHALQYYEI LLASIDAANL TPDVGKKIER SLLQSSIENM VLGRLRSPNR IPPWRNLFAS 660 AGFSPVAFSN LTEIQAECLV KRTQVGGFHV EKRQTSLVLC WKQQELLSAL SWRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-26 | 340 | 712 | 7 | 378 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF481952 | 0.0 | AF481952.1 Petunia x hybrida hairy meristem (HAM) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009803487.1 | 0.0 | PREDICTED: scarecrow-like protein 22 isoform X1 | ||||
TrEMBL | A0A1U7YHA7 | 0.0 | A0A1U7YHA7_NICSY; scarecrow-like protein 22 isoform X1 | ||||
STRING | XP_009803487.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6986 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 4e-98 | GRAS family protein |