PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009803270.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 543aa    MW: 60301.3 Da    PI: 5.6688
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009803270.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.23.8e-1011835422374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     v+ L+++Ae+++++ ++la+ +Larl+++ +s +g+p+qR+a+yf+eAL+a+la+      ++ +++++s+++++++++++k+fs++sPi+ fs 
  XP_009803270.1 183 VDELIRFAECFETNAFQLAHVILARLNQRlRSAAGKPLQRAAFYFKEALQAQLAG------STRQTRPASSSDVIQTIKSYKIFSNISPIPMFSS 271
                     678*************************999************************......778888999999********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +taNqa+leav+g+  vH+iDfdi+ G++W++++++La+++    +++p lRiT+++++e   + e + ++e+L++fA+el++ fe+++++ +++
  XP_009803270.1 272 FTANQAVLEAVDGSMLVHVIDFDIGLGGHWASFMKELADKAecrkANAPVLRITALVPEE--YAVESRLIRENLTQFARELNIGFEIDFVLIRTF 364
                     **************************************877666689***********66..99999**************************** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.eaklpre 278
                     e l+++++++  gE++aV l+ +++r         s    +++ ++++sP++vv+v++e  + ++++sF + +++ le+ys+l++sl +a+++  
  XP_009803270.1 365 ELLSFKAIKFMDGEKTAVLLSPAIFRRI------GS---GFVNDLRRISPNMVVHVDSEglMGYGTASFRQTVIDGLEFYSTLLESLeAANIGGG 450
                     **************************98......44...8*******************87788***********************88999999 PP

            GRAS 279 s..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                     +  ++++k+E+++l ++iv++va+ g++        ++W++++ +aGF+pv ls++a  qa++ll +v+++g++v +++++++l+W+dr+Lv++S
  XP_009803270.1 451 NcgDWMRKIENFVLFPKIVEMVAAVGRR------GGGSWKDAMVAAGFRPVGLSQFADFQADCLLGRVQVRGFHVAKRQAEMLLCWHDRALVATS 539
                     999************************8......99*********************************************************** PP

            GRAS 372 aWr 374
                     aWr
  XP_009803270.1 540 AWR 542
                     **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.011156522IPR005202Transcription factor GRAS
PfamPF035141.3E-98183542IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MKVPFSSNDN VSSKPLINNN NNNNLRNATF PAAANGPNLC YEPKSVLELR RSPSPIVEKQ  60
VITNPDFSAL CGGDDPLQLG DHVLSNFEDW DSLMRELGLQ DDSASLSKSN HPQLSLTQSE  120
SLTQFHNLSE FSADSTQFPT SDFSFSENFP QQFQSVNQGN YINALDLSGD IHQNNWNVGF  180
DYVDELIRFA ECFETNAFQL AHVILARLNQ RLRSAAGKPL QRAAFYFKEA LQAQLAGSTR  240
QTRPASSSDV IQTIKSYKIF SNISPIPMFS SFTANQAVLE AVDGSMLVHV IDFDIGLGGH  300
WASFMKELAD KAECRKANAP VLRITALVPE EYAVESRLIR ENLTQFAREL NIGFEIDFVL  360
IRTFELLSFK AIKFMDGEKT AVLLSPAIFR RIGSGFVNDL RRISPNMVVH VDSEGLMGYG  420
TASFRQTVID GLEFYSTLLE SLEAANIGGG NCGDWMRKIE NFVLFPKIVE MVAAVGRRGG  480
GSWKDAMVAA GFRPVGLSQF ADFQADCLLG RVQVRGFHVA KRQAEMLLCW HDRALVATSA  540
WRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2619054127378Protein SCARECROW
5b3h_A3e-2619054126377Protein SCARECROW
5b3h_D3e-2619054126377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5177940.0EF517794.1 Solanum bulbocastanum BAC 27I18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803270.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-148SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1U7YWZ80.0A0A1U7YWZ8_NICSY; scarecrow-like protein 15
STRINGXP_009803270.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-150GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]