PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009803256.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 645aa    MW: 71394.8 Da    PI: 6.2634
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009803256.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.1e-22116216198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +a+++         ++ +  tl  +d +g++W++++iyr++++r++lt+GW  Fv++++L +gD++vF   + +
  XP_009803256.1 116 FAKTLTQSDANNGGGFSVPRYCADTIfprldysADPPVQ--TLLAKDVHGKTWKFRHIYRGTPRRHLLTTGWTTFVNSKKLVAGDSIVFL--RAE 206
                     89*********************999****996555545..8999*********************************************..347 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++  +v+++r
  XP_009803256.1 207 NGDVCVGIRR 216
                     88889*9998 PP
2Auxin_resp105.46.5e-35261343183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a+++++Fev+++Prast+eF vk+++ve+al+v+++ GmRfkmafe+eds    ++Gt+ +v+ +dp+rW++S+Wr+L+
  XP_009803256.1 261 AANLAASGQPFEVTFYPRASTPEFFVKASRVEAALQVRWCSGMRFKMAFENEDSTMSWFMGTICSVQVADPIRWTDSPWRLLQ 343
                     7899****************************************************999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-29109231IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-36109219IPR015300DNA-binding pseudobarrel domain
CDDcd100172.11E-19115216No hitNo description
SMARTSM010191.9E-20116218IPR003340B3 DNA binding domain
PfamPF023626.5E-21116216IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943116218IPR003340B3 DNA binding domain
PfamPF065071.1E-29261343IPR010525Auxin response factor
PROSITE profilePS5174511.312559639IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MITSMEEEDK WLDSKFWHAC AGNMVELPAV NSIVFYFPQG HAEHACGNVE FRSEIRIPSY  60
VPCRVSGIKY MADQENDEVF AKIRMTPVSS NEVENVDDGV VAKSGLDNDQ EKPTSFAKTL  120
TQSDANNGGG FSVPRYCADT IFPRLDYSAD PPVQTLLAKD VHGKTWKFRH IYRGTPRRHL  180
LTTGWTTFVN SKKLVAGDSI VFLRAENGDV CVGIRRVKKG IADEHDTSFV APYGGFSAFL  240
RHDENKLMKR GKVKVESVIE AANLAASGQP FEVTFYPRAS TPEFFVKASR VEAALQVRWC  300
SGMRFKMAFE NEDSTMSWFM GTICSVQVAD PIRWTDSPWR LLQVTWDEPD LLQHVKCVNP  360
WLVELVSNMP TVHFSPLSPP QKKPRLLQRS DFPLNCHLPM PGFPDNHFLP NDSPAGMQGA  420
RHTQYGFSLS DLHFNKLHSS PFPVGFPPLD HAAATPSPSN STLIPKPSSS NDMSCLLTLG  480
SSTETATKSD CDKAPQLVLF GQPIFTEQQI SLSSSGDTVS PVCARASSSD GNADKIGNIS  540
DESAFTFDHH GLSEQNVEIG HCKVFIESED VGLTLELSVL GSYEALHKKL SNIFGIKIPE  600
MLNRVLYRDI TGAVKQLGDE PFSDFVKTAR RLTILTDASS VGARE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-811236451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803255.10.0PREDICTED: auxin response factor 18-like
RefseqXP_009803256.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1U7YMN70.0A0A1U7YMN7_NICSY; Auxin response factor
STRINGXP_009803255.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]