PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009803153.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 418aa MW: 48244.4 Da PI: 4.5662 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.8e-18 | 71 | 128 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.pseng..kr..krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+ +++ g k+ kr +lg+f t +Aa a+++a+k ++g XP_009803153.1 71 IYRGVRQRT-WGKWVAEIREpVYNSGrfKTsgKRLWLGTFSTSVDAALAYDEAAKVMYG 128 69****999.**********666666785578***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.2E-13 | 70 | 128 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.39E-28 | 70 | 137 | No hit | No description |
PROSITE profile | PS51032 | 21.759 | 71 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.7E-30 | 71 | 144 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-19 | 71 | 137 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.1E-9 | 72 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-28 | 72 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-9 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MSSHILHRKQ KRRRNGCDSL EEILLKWKNH YQELNSSIED VQVKKKRKIP VKRSRKGCMR 60 GKGGPENSGC IYRGVRQRTW GKWVAEIREP VYNSGRFKTS GKRLWLGTFS TSVDAALAYD 120 EAAKVMYGSN AMLNFPDYCI QNDSSSIVSI ARTSSLESTD QSSVDHEDSG AEDAKIRVDQ 180 STFATSVVTA DEKQRSCCCL TEKSDVMPEE DYENELNDSG CSSRIDFKPP NYCVKVETPI 240 KEEIEKDEFV HDNDLERLKS YEVSNSLHIM NEETTDVKPH DLNILQEQPL DFRSTENPSE 300 DFCKRLEYME HWLMEDDCST EATKVPDTFC LTKNHDEDNS FQKFLEESFD FKPIMVSQES 360 AEFNYVKTEE QFDCTYNQQI DQQTDGIISN QADWNSSISW QPEDSIKDLS VFNFDFDI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-20 | 72 | 136 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 5e-20 | 72 | 136 | 6 | 63 | ATERF1 |
3gcc_A | 5e-20 | 72 | 136 | 6 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009803153.1 | 0.0 | PREDICTED: uncharacterized protein LOC104248568 | ||||
Refseq | XP_016462903.1 | 0.0 | PREDICTED: uncharacterized protein LOC107785980 | ||||
TrEMBL | A0A1S3ZEN7 | 0.0 | A0A1S3ZEN7_TOBAC; uncharacterized protein LOC107785980 | ||||
TrEMBL | A0A1U7YJ50 | 0.0 | A0A1U7YJ50_NICSY; uncharacterized protein LOC104248568 | ||||
STRING | XP_009803153.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7965 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 3e-42 | ERF family protein |