PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009802911.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 270aa    MW: 30066.4 Da    PI: 10.2944
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009802911.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.41.2e-1161105347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rW+++E+  ++ + ++lG g+W+ Ia+++   Rt  q+ s+ qky
   XP_009802911.1  61 RWSEDEHTAFLIGLEKLGRGNWAGIAKEFVPSRTHTQVASHAQKY 105
                      9*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.39954110IPR017930Myb domain
TIGRFAMsTIGR015571.8E-1457108IPR006447Myb domain, plants
SuperFamilySSF466899.36E-1557110IPR009057Homeodomain-like
SMARTSM007176.0E-858108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-1058105IPR009057Homeodomain-like
CDDcd001671.6E-761106No hitNo description
PfamPF002492.6E-961105IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MRMAKEIHSE RRGEISRTKK VGSSSNSIKL FGVVITTNFG SSSSRSNTGR RNNNNSNKGT  60
RWSEDEHTAF LIGLEKLGRG NWAGIAKEFV PSRTHTQVAS HAQKYFERLE AEKDNKRAVI  120
KRQKFSVFDI NLAEESCRSS SPTNQPVSEE ASSSKRVVVP VTKDKEPLNQ ETPISPMPIS  180
YRVPGFPPVP MAYNKNLTIS SNNQGPHVYT ASWVPNIPFN GNYAYFPKSY YQFANISAHN  240
FASSSTNATP DQRVSSQSDR ASVDNLDLTI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802911.10.0PREDICTED: myb-like protein J
TrEMBLA0A1U7YLP70.0A0A1U7YLP7_NICSY; myb-like protein J
STRINGXP_009802911.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13677916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.12e-21MYB_related family protein