PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009802877.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 248aa MW: 27959.6 Da PI: 7.9689 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84 | 2.5e-26 | 79 | 165 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA+++GF +r+++ ++s rnge ++r++vC+keg++++++++ + +r+ r gCka++ vkke++gkw+v+kl++eH+H+l+ XP_009802877.1 79 YYSTYATHLGFVMRVDAFRRSMRNGELVWRRLVCNKEGFSKSRQNQ--NGKRKCRAIREGCKAMIIVKKEQSGKWVVAKLVKEHSHPLV 165 8*****************************************9988..888888899******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.8E-25 | 79 | 165 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MVESSSGKEL TTNGVEAEGR LNMEHYVVNE NNTTADDGEM VESSSGKELT RNGVEAEGRP 60 NLEPYVGMEF ESEEAAKAYY STYATHLGFV MRVDAFRRSM RNGELVWRRL VCNKEGFSKS 120 RQNQNGKRKC RAIREGCKAM IIVKKEQSGK WVVAKLVKEH SHPLVVKPAN TRIGSILCQT 180 PDDKDVKIRE LTAELQKERK RSAVLQEQLD MVLKDMEDHS DQLSKNINDI VKSVNELESR 240 KIVSPNGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 1e-139 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 1e-139 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009802876.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_009802877.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
Refseq | XP_016509498.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1S4D830 | 0.0 | A0A1S4D830_TOBAC; protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1U7YFJ1 | 0.0 | A0A1U7YFJ1_NICSY; protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
TrEMBL | A0A1U7YLL2 | 0.0 | A0A1U7YLL2_NICSY; protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
STRING | XP_009802876.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 4e-83 | FAR1 family protein |