PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009802691.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 834aa    MW: 92461.7 Da    PI: 6.6779
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009802691.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-08109151347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
   XP_009802691.1 109 AWTRQEEESFFSALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 151
                      6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.16E-10104156IPR009057Homeodomain-like
PROSITE profilePS5129313.413105156IPR017884SANT domain
SMARTSM007173.2E-6106154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-5108154IPR009057Homeodomain-like
CDDcd001679.16E-6109152No hitNo description
PfamPF002493.4E-6109151IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MLFPESASLT LKVECKASTS DDFNMQMEPQ VSLECDRCLH PETLMCKDGV SDDTQHPAAA  60
QPVITSEDHP AAQLSVLIYD HAVTQQVSLS QDQVMLQKPA KRQTRQWAAW TRQEEESFFS  120
ALRQVGKNFE KITSRVQSKN KDQVRHYYYR LVRRMNKLLG PELSLDAKNS KDTNAAMLRW  180
WSLLEKSSCK ASKLHLKPRR FKIFIETLES QLLKDRKKNV RRRPSQGESS STAAASLSSH  240
SRVSTNDSRT VKVVLLDNQD VQKFGSGKGS SLKRHVTMGV NRSNTKVDSS PVKNARHRRK  300
IGSVSTAAYK RWEKAAIAGV SLVADAAEHL ERATIGINGF EHVGKDVPSL PTLSQNLLNE  360
TNLQSCMKLK LQLFPVDEGT RRALEMDNHN PYLELTLSNR KKMSSILEHL NRKWGSSSIA  420
TGKLVLFPYH VQMENLVQSL RWTKDTTLSA ADVYNLIGSP PVFRLRYGWF PNSELGTFQA  480
PLSSTTPFTQ NTNTNITEEK NEEVLASSHG KLVRFSKEPL VSNPRMTVTS SSTELSGESN  540
LQATMGVNTY NSDHNETLLM HRRDNGAITT EKQVEMHDMQ GSKNSALSAG DWEDSLTNIS  600
VGDLLSDAPD DEETDCIEST LPGSSHFLQQ MPFSCDSFDA AIAAHIYKHQ SKAESQMALP  660
PQASSIWNAE DTCDAFAFQK DVAFRRTANN SSSNVGAENR QHISQSSSLL LDAGVKDLPG  720
KMEPLTDELA HEDPVDECHA QALGGSTKDL SGLSDIYWPD SLGPLELDAP SCRYHSEDLI  780
LSDNSLGGLN RLIASSLDAF QNCSFFGLDK KEPGSTVEAV ETTSLADYKI GAKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6476041e-129EF647604.1 Solanum lycopersicum chromosome 9 clone C09HBa0116C14, complete sequence.
GenBankHG9755211e-129HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802691.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X3
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A1U7YL270.0A0A1U7YL27_NICSY; TSL-kinase interacting protein 1 isoform X3
STRINGXP_009802688.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.20.0TSL-kinase interacting protein 1