PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009802570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 326aa MW: 36036.6 Da PI: 6.9498 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.2 | 5.5e-19 | 244 | 277 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C++ kTp+WR gp g+ktLCnaCG++y++ + XP_009802570.1 244 CTHCQVQKTPQWRAGPLGPKTLCNACGVRYKSGR 277 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.8E-80 | 5 | 322 | IPR016679 | Transcription factor, GATA, plant |
SuperFamily | SSF57716 | 7.13E-15 | 236 | 300 | No hit | No description |
PROSITE profile | PS50114 | 12.308 | 238 | 274 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.3E-15 | 238 | 292 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.4E-14 | 241 | 275 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.01E-14 | 243 | 292 | No hit | No description |
Pfam | PF00320 | 1.0E-16 | 244 | 277 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 244 | 269 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 326 aa Download sequence Send to blast |
MELIEARALK SSFLSDMAMK TSQQVFLDDI WCVAGINNVP SDDFSVDDLL DFSDKDFKDG 60 QSLQELHEDD EKDSFSGSSQ HRNSQVSNFS CMDSFSGELP VPVDELENLE WLSQFVDDST 120 SEFSLLCPAG SFKDKTGGFQ VSRSEPVVRP VVQKLKVPCF PLPVVQKPRT KRSRPAGRKW 180 SFSSPTVSAD SCSPTSSSYG SSPFPSVLFS NPVLDGDLFC SVEKPPLKKP KKFSTAETGS 240 GRRCTHCQVQ KTPQWRAGPL GPKTLCNACG VRYKSGRLFP EYRPACSPTF SQEVHSNSHR 300 KVLEMRRKKE SGEVVDSGLA TMISTC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB107692 | 0.0 | AB107692.1 Nicotiana tabacum AGP4 mRNA for AG-motif binding protein-4, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009802570.1 | 0.0 | PREDICTED: GATA transcription factor 5-like | ||||
TrEMBL | A0A1U7YUW4 | 0.0 | A0A1U7YUW4_NICSY; GATA transcription factor | ||||
STRING | XP_009802570.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1154 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66320.2 | 7e-55 | GATA transcription factor 5 |