PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009802527.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 750aa MW: 82674.6 Da PI: 4.9524 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.6 | 2.8e-20 | 91 | 146 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ XP_009802527.1 91 KRYHRHTQHQIQEMENFFKNCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 146 567899***********************************************995 PP | |||||||
2 | START | 177.3 | 9.3e-56 | 272 | 492 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela +a++e++++a+ +ep+W s+ +n++e+++ f+++ + +++ea+++++vv+ ++ +lve+l+d++ +W+ ++ a t+ XP_009802527.1 272 ELAVAAMEEFIQMAQMGEPLWLPSVdrrtNFLNEEEYVRLFPTGIGpkiagFKTEASKDTAVVFLNPINLVEILMDTN-KWSSMFSsivsTAVTM 365 57899********************999999************999********************************.*******9999999** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 +v+s+g galq+++ae+q++ p vp Rd +fvRy++++ +g w++vdvS+d ++ p ++s+ +++pSg+li+ ++ng+skvtw+ehv XP_009802527.1 366 DVLSTGvagnfnGALQVIFAEFQVPFPQVPtRDCYFVRYCKRSVDGIWAVVDVSLDYLRPIP-TASC---QRRPSGCLIQAMPNGYSKVTWMEHV 456 **************************************************************.5655...55*********************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 + ++ + +++++l++sgla+gak+w atl+rqce+ XP_009802527.1 457 EADDTAIYNIYKPLLNSGLAFGAKRWIATLDRQCER 492 **********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-20 | 70 | 145 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.19E-19 | 80 | 148 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.261 | 87 | 147 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.4E-18 | 88 | 151 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.8E-18 | 91 | 145 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.00E-19 | 91 | 148 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 122 | 145 | IPR017970 | Homeobox, conserved site |
SuperFamily | SSF55961 | 1.72E-33 | 263 | 494 | No hit | No description |
PROSITE profile | PS50848 | 39.526 | 263 | 495 | IPR002913 | START domain |
CDD | cd08875 | 7.86E-117 | 267 | 491 | No hit | No description |
SMART | SM00234 | 7.8E-50 | 272 | 492 | IPR002913 | START domain |
Pfam | PF01852 | 4.7E-45 | 273 | 492 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.2E-5 | 331 | 492 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.82E-23 | 523 | 739 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 750 aa Download sequence Send to blast |
MNPANQFSSM IRNDGNDGGY VSSSSGLPLG QSGNIMESQI HSLDMASNTS ESELMPLLME 60 EEFDSKSGSH DNNEEGKSSD EQDVNQPERI KRYHRHTQHQ IQEMENFFKN CPHPDDKQRK 120 ELSRELGLEP LQVKFWFQNK RTQMKNQNDR SELSSLRDEN EKLRTEHVQL REALNNATSC 180 PICGGPQISL GEMSFEENQL RIENARLKEE VDRISAFAAK YVGKPVSSLN VYSPSVTPPS 240 SLDLGNAFGN NREVIRSSFN GPTEAEKPFI IELAVAAMEE FIQMAQMGEP LWLPSVDRRT 300 NFLNEEEYVR LFPTGIGPKI AGFKTEASKD TAVVFLNPIN LVEILMDTNK WSSMFSSIVS 360 TAVTMDVLST GVAGNFNGAL QVIFAEFQVP FPQVPTRDCY FVRYCKRSVD GIWAVVDVSL 420 DYLRPIPTAS CQRRPSGCLI QAMPNGYSKV TWMEHVEADD TAIYNIYKPL LNSGLAFGAK 480 RWIATLDRQC ERLASAMATN LPDDDMTNMV LGGPEGRRSV LKLAERMVIS YCSGVSATAA 540 HQWTTLSGSG SENDVRIMFR KSINDPGRPP GIVMCAATSF WLPISAKTVF DFLRDVNTRS 600 EWDILSNGSV IQRLVYIANG RETGSSVSIL RVNSSAISSQ NNMLILQESS TDPTGSFVVY 660 APVDVPAMNT VINGGDPEYV ALLPSGFAIL PDGPPGRIAG GSLLTIAFQI FVDSVPTAKL 720 SLGSVATVNK LIACTVDKIR AALLSDTPRC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009802527.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X4 | ||||
Refseq | XP_016467380.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2-like | ||||
Swissprot | Q6ZAR0 | 0.0 | ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1 | ||||
TrEMBL | A0A1S3ZSJ6 | 0.0 | A0A1S3ZSJ6_TOBAC; homeobox-leucine zipper protein HDG2-like | ||||
TrEMBL | A0A1U7YEI6 | 0.0 | A0A1U7YEI6_NICSY; homeobox-leucine zipper protein HDG2-like isoform X4 | ||||
STRING | XP_009802524.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |
Publications ? help Back to Top | |||
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