PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009802526.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 751aa MW: 82802.7 Da PI: 4.9524 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.6 | 2.8e-20 | 91 | 146 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ XP_009802526.1 91 KRYHRHTQHQIQEMENFFKNCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 146 567899***********************************************995 PP | |||||||
2 | START | 177.3 | 9.3e-56 | 273 | 493 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela +a++e++++a+ +ep+W s+ +n++e+++ f+++ + +++ea+++++vv+ ++ +lve+l+d++ +W+ ++ a t+ XP_009802526.1 273 ELAVAAMEEFIQMAQMGEPLWLPSVdrrtNFLNEEEYVRLFPTGIGpkiagFKTEASKDTAVVFLNPINLVEILMDTN-KWSSMFSsivsTAVTM 366 57899********************999999************999********************************.*******9999999** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 +v+s+g galq+++ae+q++ p vp Rd +fvRy++++ +g w++vdvS+d ++ p ++s+ +++pSg+li+ ++ng+skvtw+ehv XP_009802526.1 367 DVLSTGvagnfnGALQVIFAEFQVPFPQVPtRDCYFVRYCKRSVDGIWAVVDVSLDYLRPIP-TASC---QRRPSGCLIQAMPNGYSKVTWMEHV 457 **************************************************************.5655...55*********************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 + ++ + +++++l++sgla+gak+w atl+rqce+ XP_009802526.1 458 EADDTAIYNIYKPLLNSGLAFGAKRWIATLDRQCER 493 **********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-20 | 70 | 145 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.19E-19 | 80 | 148 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.261 | 87 | 147 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.4E-18 | 88 | 151 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.8E-18 | 91 | 145 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.01E-19 | 91 | 148 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 122 | 145 | IPR017970 | Homeobox, conserved site |
SuperFamily | SSF55961 | 1.72E-33 | 264 | 495 | No hit | No description |
PROSITE profile | PS50848 | 39.526 | 264 | 496 | IPR002913 | START domain |
CDD | cd08875 | 7.73E-117 | 268 | 492 | No hit | No description |
SMART | SM00234 | 7.8E-50 | 273 | 493 | IPR002913 | START domain |
Pfam | PF01852 | 4.8E-45 | 274 | 493 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.2E-5 | 332 | 493 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.82E-23 | 524 | 740 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 751 aa Download sequence Send to blast |
MNPANQFSSM IRNDGNDGGY VSSSSGLPLG QSGNIMESQI HSLDMASNTS ESELMPLLME 60 EEFDSKSGSH DNNEEGKSSD EQDVNQPERI KRYHRHTQHQ IQEMENFFKN CPHPDDKQRK 120 ELSRELGLEP LQVKFWFQNK RTQMKNQNDR SELSSLRDEN EKLRTEHVQL REALNNATSC 180 PICGGPQISL GEMSFEENQL RIENARLKEE QVDRISAFAA KYVGKPVSSL NVYSPSVTPP 240 SSLDLGNAFG NNREVIRSSF NGPTEAEKPF IIELAVAAME EFIQMAQMGE PLWLPSVDRR 300 TNFLNEEEYV RLFPTGIGPK IAGFKTEASK DTAVVFLNPI NLVEILMDTN KWSSMFSSIV 360 STAVTMDVLS TGVAGNFNGA LQVIFAEFQV PFPQVPTRDC YFVRYCKRSV DGIWAVVDVS 420 LDYLRPIPTA SCQRRPSGCL IQAMPNGYSK VTWMEHVEAD DTAIYNIYKP LLNSGLAFGA 480 KRWIATLDRQ CERLASAMAT NLPDDDMTNM VLGGPEGRRS VLKLAERMVI SYCSGVSATA 540 AHQWTTLSGS GSENDVRIMF RKSINDPGRP PGIVMCAATS FWLPISAKTV FDFLRDVNTR 600 SEWDILSNGS VIQRLVYIAN GRETGSSVSI LRVNSSAISS QNNMLILQES STDPTGSFVV 660 YAPVDVPAMN TVINGGDPEY VALLPSGFAI LPDGPPGRIA GGSLLTIAFQ IFVDSVPTAK 720 LSLGSVATVN KLIACTVDKI RAALLSDTPR C |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009802526.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X3 | ||||
Swissprot | Q6ZAR0 | 0.0 | ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1 | ||||
TrEMBL | A0A1U7YKL9 | 0.0 | A0A1U7YKL9_NICSY; homeobox-leucine zipper protein HDG2-like isoform X3 | ||||
STRING | XP_009802524.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |
Publications ? help Back to Top | |||
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