PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009802524.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 752aa    MW: 82930.8 Da    PI: 4.9524
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009802524.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.62.9e-2092147257
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     ++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  XP_009802524.1  92 KRYHRHTQHQIQEMENFFKNCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 147
                     567899***********************************************995 PP
2START177.39.4e-562744941206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++e++++a+ +ep+W  s+      +n++e+++ f+++ +     +++ea+++++vv+ ++ +lve+l+d++ +W+ ++      a t+
  XP_009802524.1 274 ELAVAAMEEFIQMAQMGEPLWLPSVdrrtNFLNEEEYVRLFPTGIGpkiagFKTEASKDTAVVFLNPINLVEILMDTN-KWSSMFSsivsTAVTM 367
                     57899********************999999************999********************************.*******9999999** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +v+s+g      galq+++ae+q++ p vp Rd +fvRy++++ +g w++vdvS+d  ++ p ++s+   +++pSg+li+ ++ng+skvtw+ehv
  XP_009802524.1 368 DVLSTGvagnfnGALQVIFAEFQVPFPQVPtRDCYFVRYCKRSVDGIWAVVDVSLDYLRPIP-TASC---QRRPSGCLIQAMPNGYSKVTWMEHV 458
                     **************************************************************.5655...55*********************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     + ++  + +++++l++sgla+gak+w atl+rqce+
  XP_009802524.1 459 EADDTAIYNIYKPLLNSGLAFGAKRWIATLDRQCER 494
                     **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-2071146IPR009057Homeodomain-like
SuperFamilySSF466899.19E-1981149IPR009057Homeodomain-like
PROSITE profilePS5007116.26188148IPR001356Homeobox domain
SMARTSM003893.4E-1889152IPR001356Homeobox domain
PfamPF000467.8E-1892146IPR001356Homeobox domain
CDDcd000866.03E-1992149No hitNo description
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
SuperFamilySSF559611.72E-33265496No hitNo description
PROSITE profilePS5084839.526265497IPR002913START domain
CDDcd088757.43E-117269493No hitNo description
SMARTSM002347.8E-50274494IPR002913START domain
PfamPF018524.8E-45275494IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-5333494IPR023393START-like domain
SuperFamilySSF559612.82E-23525741No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MNPANQFSSM IRNDGNDGGY VSSSSGLPLG QQSGNIMESQ IHSLDMASNT SESELMPLLM  60
EEEFDSKSGS HDNNEEGKSS DEQDVNQPER IKRYHRHTQH QIQEMENFFK NCPHPDDKQR  120
KELSRELGLE PLQVKFWFQN KRTQMKNQND RSELSSLRDE NEKLRTEHVQ LREALNNATS  180
CPICGGPQIS LGEMSFEENQ LRIENARLKE EQVDRISAFA AKYVGKPVSS LNVYSPSVTP  240
PSSLDLGNAF GNNREVIRSS FNGPTEAEKP FIIELAVAAM EEFIQMAQMG EPLWLPSVDR  300
RTNFLNEEEY VRLFPTGIGP KIAGFKTEAS KDTAVVFLNP INLVEILMDT NKWSSMFSSI  360
VSTAVTMDVL STGVAGNFNG ALQVIFAEFQ VPFPQVPTRD CYFVRYCKRS VDGIWAVVDV  420
SLDYLRPIPT ASCQRRPSGC LIQAMPNGYS KVTWMEHVEA DDTAIYNIYK PLLNSGLAFG  480
AKRWIATLDR QCERLASAMA TNLPDDDMTN MVLGGPEGRR SVLKLAERMV ISYCSGVSAT  540
AAHQWTTLSG SGSENDVRIM FRKSINDPGR PPGIVMCAAT SFWLPISAKT VFDFLRDVNT  600
RSEWDILSNG SVIQRLVYIA NGRETGSSVS ILRVNSSAIS SQNNMLILQE SSTDPTGSFV  660
VYAPVDVPAM NTVINGGDPE YVALLPSGFA ILPDGPPGRI AGGSLLTIAF QIFVDSVPTA  720
KLSLGSVATV NKLIACTVDK IRAALLSDTP RC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802524.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLA0A1U7YTJ00.0A0A1U7YTJ0_NICSY; homeobox-leucine zipper protein HDG2-like isoform X1
STRINGXP_009802524.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]