PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009802434.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 336aa    MW: 37906.1 Da    PI: 4.6693
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009802434.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.81.4e-062312691154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L++A+eYIk L
  XP_009802434.1 231 VRKEKMGDRITALQQLVSPF-----GKTDTASVLQEAIEYIKFL 269
                     5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.436220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-10230280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-7230273No hitNo description
SuperFamilySSF474594.84E-12230282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0015231275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MADEYFQAGV CGESSWWNST KNIFGLSPCA SSIYDDPIGN LISWPISDLL DMKTKIDLSS  60
PSSTLDWNHS ANDKLDNTYP SMLQEDINSS LNYQQENGVD CPNKLKRNFS SITEDSSTNS  120
KPMNQDFTYY SDLLQTLFDT DPDQQPQQSF FTNNQPINCT SSNYRQSFND FAPSLPTSSE  180
IRASLPNITS KSNIEEIRES TSRSLTKNNS NEPSYKRPRI ETPSPLPTFK VRKEKMGDRI  240
TALQQLVSPF GKTDTASVLQ EAIEYIKFLH DQVNVLSNTY MKKGSPTQCQ QVREREGLKQ  300
DLRSQGLCLV PISSTFPVTA ETTMDFWTPT FGATFK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802434.10.0PREDICTED: transcription factor bHLH112-like
TrEMBLA0A1U7YT900.0A0A1U7YT90_NICSY; transcription factor bHLH112-like
STRINGXP_009802434.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-57bHLH family protein