PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009802388.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 316aa MW: 34318.7 Da PI: 6.3692 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.6 | 6e-33 | 39 | 93 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl XP_009802388.1 39 KPRLRWTADLHERFVDAVTQLGGPSKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 93 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.661 | 36 | 96 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-31 | 36 | 93 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.55E-16 | 39 | 93 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.2E-24 | 39 | 94 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.2E-8 | 41 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.5E-16 | 137 | 182 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MFPRLIQPPG EDEYNMNIGI HHTHNINGDP CLVLTSDPKP RLRWTADLHE RFVDAVTQLG 60 GPSKATPKAI MRTMGVKGLT LFHLKSHLQK YRLGKLSQKD LGEASKDGLT ATYSLESPCS 120 GGTPQQLPAS DLNEGYEVKE ALRAQMEVQS KLHLQVEAEK HLQIRQDAEQ RYISMLEKAC 180 KMLADQFIGG VATENDQETC QGLGTRTQVT PLCNPLGLCP SESADLVGVH GPEEVSPRIH 240 PQFTDCSTES CLTSHESPAG LPLEGTSTGG KKRGPNGDST HASVVWGEAD MISSGVRLLQ 300 VNRFGITSSN VQNVSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-18 | 39 | 95 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-18 | 39 | 95 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-18 | 39 | 95 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-18 | 39 | 95 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-18 | 39 | 95 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-18 | 39 | 95 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-18 | 39 | 95 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-18 | 39 | 95 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-18 | 39 | 95 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-18 | 39 | 95 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-18 | 39 | 95 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-18 | 39 | 95 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ718036 | 0.0 | AJ718036.1 Nicotiana tabacum cDNA-AFLP-fragment BSTT23-3-460, cultivar Bright Yellow 2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009802388.1 | 0.0 | PREDICTED: uncharacterized protein LOC104247930 isoform X1 | ||||
Refseq | XP_016438721.1 | 0.0 | PREDICTED: uncharacterized protein LOC107764626 isoform X1 | ||||
TrEMBL | A0A1S3XFE8 | 0.0 | A0A1S3XFE8_TOBAC; uncharacterized protein LOC107764626 isoform X1 | ||||
TrEMBL | A0A1U7YGX3 | 0.0 | A0A1U7YGX3_NICSY; uncharacterized protein LOC104247930 isoform X1 | ||||
STRING | XP_009802388.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9764 | 20 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 3e-70 | G2-like family protein |