PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009802192.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 282aa    MW: 32453.2 Da    PI: 7.4171
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009802192.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.7e-103075346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WTteE +++ da +++ ++   +W  +a++++ g+t ++++  ++ 
   XP_009802192.1 30 KWTTEENKRFEDALALFDKEtpdRWYNVAAMIP-GKTVNDVIKQYRE 75
                     8*****************99*************.********99986 PP

2Myb_DNA-binding45.61.7e-14143187347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r   ++Rt+ q+ s+ qky
   XP_009802192.1 143 PWTEEEHRQFLLGLKKYGKGDWRNISRNYVTTRTPTQVASHAQKY 187
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.5582681IPR017884SANT domain
Gene3DG3DSA:1.10.10.608.8E-42677IPR009057Homeodomain-like
SMARTSM007172.8E-92779IPR001005SANT/Myb domain
PfamPF002493.6E-82976IPR001005SANT/Myb domain
SuperFamilySSF466891.51E-112983IPR009057Homeodomain-like
CDDcd001677.29E-73077No hitNo description
PROSITE profilePS5129421.119136192IPR017930Myb domain
SuperFamilySSF466892.44E-17138191IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-18139191IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.8E-12140187IPR009057Homeodomain-like
SMARTSM007177.2E-13140190IPR001005SANT/Myb domain
CDDcd001671.62E-10143188No hitNo description
PfamPF002494.8E-12143187IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSSEMGFLSP TTTYLRNSNW LFEENKGTTK WTTEENKRFE DALALFDKET PDRWYNVAAM  60
IPGKTVNDVI KQYRELVEDI SDIEAGLIPL PGYTTSTNSF TLEWINHDQE GDFHDLNKRF  120
YGPSGKRSTS TRSSEHERKK GVPWTEEEHR QFLLGLKKYG KGDWRNISRN YVTTRTPTQV  180
ASHAQKYFIR QLSGGKDKRR SSIHDITTVN LTEMKSPSTE NHISSISTHK SAPSPQEQAL  240
YEYNLLNQEA DIAFKTYGLK LHENGMHSVI LPGLQFAQYN TM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1831961176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802192.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-94DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1U7YDJ40.0A0A1U7YDJ4_NICSY; transcription factor DIVARICATA-like
STRINGXP_009802192.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-104MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]