PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009802185.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 294aa MW: 33415.2 Da PI: 9.5485

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009802185.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108	1.1e-33	16	94	50	129
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 k+k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkd+e+++ +++lvg+kktLvfykgrapkgekt+Wv+heyrle XP_009802185.1 16 KAKMGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKDREIFR-GKSLVGMKKTLVFYKGRAPKGEKTNWVIHEYRLE 94 4567899************************************.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.239	1	118	IPR003441	NAC domain
SuperFamily	SSF101941	1.7E-38	16	118	IPR003441	NAC domain
Pfam	PF02365	2.1E-15	21	93	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MNTGCFVHQT IHFSWKAKMG EKEWYFFCVR DKKYPTGLRT NRATAAGYWK ATGKDREIFR 60 GKSLVGMKKT LVFYKGRAPK GEKTNWVIHE YRLEGRLSLQ NLPKTAKNEW VICRVFQKSC 120 GGKKIHISGL VKLNSDENEM ANSNCLPPLT DSSPYTSKIK PSASQSSHVH CFSNFFTAQK 180 SQENLINCFN NSPNFSALSN PMNNIPINTF SCNQIVPVQS SFQSQVSFGM QNPTILKTLL 240 ENYTQNFKKE EIVSLSQETK LSTDMNNEIS SIVSNLEMGR RLLEDQSLDC LWGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-32	16	124	65	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-32	16	124	65	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-32	16	124	65	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-32	16	124	65	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-32	16	124	68	174	NAC domain-containing protein 19
3swm_B	2e-32	16	124	68	174	NAC domain-containing protein 19
3swm_C	2e-32	16	124	68	174	NAC domain-containing protein 19
3swm_D	2e-32	16	124	68	174	NAC domain-containing protein 19
3swp_A	2e-32	16	124	68	174	NAC domain-containing protein 19
3swp_B	2e-32	16	124	68	174	NAC domain-containing protein 19
3swp_C	2e-32	16	124	68	174	NAC domain-containing protein 19
3swp_D	2e-32	16	124	68	174	NAC domain-containing protein 19
4dul_A	2e-32	16	124	65	171	NAC domain-containing protein 19
4dul_B	2e-32	16	124	65	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	1e-103	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009802185.1	0.0	PREDICTED: NAC domain-containing protein 100 isoform X2
Refseq	XP_016439816.1	0.0	PREDICTED: NAC domain-containing protein 100-like isoform X2
Swissprot	Q9FLJ2	8e-96	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1S3XIR9	0.0	A0A1S3XIR9_TOBAC; NAC domain-containing protein 100-like isoform X2
TrEMBL	A0A1U7YTP8	0.0	A0A1U7YTP8_NICSY; NAC domain-containing protein 100 isoform X2
STRING	XP_009802067.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	2e-95	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]