PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009802067.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 39121.5 Da PI: 8.3076 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.4 | 2e-55 | 17 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +kv ++++ + +i evd++k+ePwdLp k+k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkd+e+++ XP_009802067.1 17 LPPGFRFHPTDEELITHYLSNKVVDSNFFA-IAIGEVDLNKFEPWDLPWKAKMGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKDREIFR- 109 79*************************877.78***************888999****************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfykgrapkgekt+Wv+heyrle XP_009802067.1 110 GKSLVGMKKTLVFYKGRAPKGEKTNWVIHEYRLE 143 999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-63 | 13 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.882 | 17 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-28 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MENYSGLVKE DDQQMELPPG FRFHPTDEEL ITHYLSNKVV DSNFFAIAIG EVDLNKFEPW 60 DLPWKAKMGE KEWYFFCVRD KKYPTGLRTN RATAAGYWKA TGKDREIFRG KSLVGMKKTL 120 VFYKGRAPKG EKTNWVIHEY RLEGRLSLQN LPKTAKNEWV ICRVFQKSCG GKKIHISGLV 180 KLNSDENEMA NSNCLPPLTD SSPYTSKIKP SASQSSHVHC FSNFFTAQKS QENLINCFNN 240 SPNFSALSNP MNNIPINTFS CNQIVPVQSS FQSQVSFGMQ NPTILKTLLE NYTQNFKKEE 300 IVSLSQETKL STDMNNEISS IVSNLEMGRR LLEDQSLDCL WGC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-55 | 8 | 173 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-55 | 8 | 173 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-55 | 8 | 173 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-55 | 8 | 173 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-55 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
3swm_B | 8e-55 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
3swm_C | 8e-55 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
3swm_D | 8e-55 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
3swp_A | 8e-55 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
3swp_B | 8e-55 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
3swp_C | 8e-55 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
3swp_D | 8e-55 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-55 | 8 | 173 | 6 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-55 | 8 | 173 | 6 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 1e-103 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009802067.1 | 0.0 | PREDICTED: NAC domain-containing protein 100 isoform X1 | ||||
Refseq | XP_009802134.1 | 0.0 | PREDICTED: NAC domain-containing protein 100 isoform X1 | ||||
Refseq | XP_016439814.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like isoform X1 | ||||
Refseq | XP_016439815.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like isoform X1 | ||||
Swissprot | Q9FLJ2 | 1e-131 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A1S3XIL9 | 0.0 | A0A1S3XIL9_TOBAC; NAC domain-containing protein 100-like isoform X1 | ||||
TrEMBL | A0A1U7YD76 | 0.0 | A0A1U7YD76_NICSY; NAC domain-containing protein 100 isoform X1 | ||||
STRING | XP_009802067.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-131 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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