PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009802036.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 273aa MW: 29794.8 Da PI: 5.6302

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009802036.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.7	1.4e-29	78	135	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ itY +eHnh+ XP_009802036.1 78 DSWSWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRLDPTTLLITYCSEHNHQ 135 99**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-30	68	137	IPR003657	WRKY domain
PROSITE profile	PS50811	31.112	71	137	IPR003657	WRKY domain
SuperFamily	SSF118290	7.59E-26	72	137	IPR003657	WRKY domain
SMART	SM00774	1.7E-35	76	136	IPR003657	WRKY domain
Pfam	PF03106	7.7E-25	78	135	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MEDRLNRRST PFFIKQEDST GTPPDNAADS PFSGDEAAEV NMPSPRKSRR GAKKKVITVP 60 IIDADGSRSK GEVYPPPDSW SWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSRLD 120 PTTLLITYCS EHNHQFPAAT SKHHHHPPAT STPTTSTTST NTAGDNNAAA AATDVTMTDK 180 SSPEECDVFA YQHDNGFSEL AGELGWFSDV GTPTFMENTS SMVGSTWNDA DVALMLPIRE 240 EDQSLFGDLG ELPECSVVFR RYSVEAPCCG GTG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-20	54	137	6	79	Disease resistance protein RRS1
5w3x_D	2e-20	54	137	6	79	Disease resistance protein RRS1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009802036.1	0.0	PREDICTED: probable WRKY transcription factor 65 isoform X1
Refseq	XP_016503554.1	0.0	PREDICTED: probable WRKY transcription factor 65 isoform X1
TrEMBL	A0A1S4CRB0	0.0	A0A1S4CRB0_TOBAC; probable WRKY transcription factor 65 isoform X1
TrEMBL	A0A1U7YJ90	0.0	A0A1U7YJ90_NICSY; probable WRKY transcription factor 65 isoform X1
STRING	XP_009802036.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7468	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.1	1e-59	WRKY DNA-binding protein 69