PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009801899.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 327aa    MW: 37920.3 Da    PI: 6.4292
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009801899.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.3e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEdellv++++  G g+Wk+ +++ g+ R++k+c++rw +yl
   XP_009801899.1 14 KGKWTAEEDELLVNYIQANGEGSWKSLPKKAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding53.94.1e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T++Ede +v+++  lG++ W++Ia++++ gRt++ +k++w +
   XP_009801899.1  67 RGKFTADEDETIVKLHSSLGNR-WSLIANHLP-GRTDNAIKNYWIS 110
                      89********************.*********.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.024961IPR017930Myb domain
SuperFamilySSF466894.12E-3011108IPR009057Homeodomain-like
SMARTSM007171.7E-131363IPR001005SANT/Myb domain
PfamPF002491.1E-151461IPR001005SANT/Myb domain
CDDcd001672.27E-81661No hitNo description
PROSITE profilePS5129427.20662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2565116IPR009057Homeodomain-like
SMARTSM007178.1E-1666114IPR001005SANT/Myb domain
PfamPF002493.5E-1567110IPR001005SANT/Myb domain
CDDcd001673.76E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MVRAPCCQKV GLKKGKWTAE EDELLVNYIQ ANGEGSWKSL PKKAGLLRCG KSCRLRWTNY  60
LRPDLKRGKF TADEDETIVK LHSSLGNRWS LIANHLPGRT DNAIKNYWIS NLRRRLYSFR  120
LHKKLIKTTA ELPKMAVAAA GNCESSRKYG RVGRSKAKNY KNINSTTFES IGKVKSSCSR  180
GKGTGVMWSE EGSIESLLPE SYTVDIGLAM QRHEHQGESE INESRNEEGE DKNKKYINVT  240
PEKQDVWSFE EQELGQIHEQ NEGNETVLEQ QHNENWHDFD NWCDMNFDHL YEEELWDDQW  300
NSLNLEFGSN EECTYSDNML LWLWNDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801899.10.0PREDICTED: myb-related protein 330-like
RefseqXP_016444804.10.0PREDICTED: myb-related protein 330-like
TrEMBLA0A1S3XY780.0A0A1S3XY78_TOBAC; myb-related protein 330-like
TrEMBLA0A1U7YRQ00.0A0A1U7YRQ0_NICSY; myb-related protein 330-like
STRINGXP_009801899.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.13e-67myb domain protein 111