PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009801687.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 265aa MW: 30282 Da PI: 6.5236 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 137.9 | 6.5e-43 | 10 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF Pt+eelv++yL++k++gk+ l++++vi+ v+iy+++P +Lp+ +++++++w+fF++ + ++a+g r++r t++gyWkatg+ XP_009801687.1 10 LPPGFRFYPTEEELVDFYLRNKLNGKReLDIQRVIPVVNIYQHNPCQLPEmageGIRNDSEQWFFFIPIQDREARGGRPTRLTTEGYWKATGTPG 104 79**********************9998999999**************9545665666888********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++++ +g k+t+vfykgrap+g+kt W m+ey++ XP_009801687.1 105 YVYSSNNRIIGGKRTMVFYKGRAPNGKKTLWKMNEYKA 142 ************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-46 | 7 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.423 | 10 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-21 | 11 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MEMYDSNNLL PPGFRFYPTE EELVDFYLRN KLNGKRELDI QRVIPVVNIY QHNPCQLPEM 60 AGEGIRNDSE QWFFFIPIQD REARGGRPTR LTTEGYWKAT GTPGYVYSSN NRIIGGKRTM 120 VFYKGRAPNG KKTLWKMNEY KASDGEASAT NSVTNLKLRH EFSLCRMYKK SKCVRAFDRR 180 PPGFGIIEGT VVPPQPLNAV GDDEATPSNQ NINPPNDKNL LAQNVYLMES SSSGEEHART 240 SQPVETSNDL DFSDVPLWDW DCHFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-30 | 10 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-30 | 10 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-30 | 10 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-30 | 10 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-30 | 10 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-30 | 10 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-30 | 10 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-30 | 10 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-30 | 10 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-30 | 10 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-30 | 10 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-30 | 10 | 170 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 4e-30 | 10 | 170 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-30 | 10 | 170 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 1e-82 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009801687.1 | 0.0 | PREDICTED: NAC domain-containing protein 90-like | ||||
TrEMBL | A0A1U7YC31 | 0.0 | A0A1U7YC31_NICSY; NAC domain-containing protein 90-like | ||||
STRING | XP_009801687.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2494 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-75 | NAC domain containing protein 90 |