PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009801639.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 64aa MW: 7421.36 Da PI: 6.2366 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.9 | 4.8e-08 | 5 | 47 | 5 | 45 |
-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 Tt +++ +a +++ ++ +W+ Ia ++g g+++++++ ++ XP_009801639.1 5 TTRQNKKFEEALALFDKEtpdRWHNIAMCVG-GKSAEEVRRHYE 47 5667799*********99*************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.72E-10 | 5 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.006 | 5 | 52 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-5 | 10 | 47 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-5 | 10 | 50 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 64 aa Download sequence Send to blast |
MGSSTTRQNK KFEEALALFD KETPDRWHNI AMCVGGKSAE EVRRHYELLV KDIMQIENGQ 60 ENCH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-19 | 5 | 60 | 12 | 67 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009801639.1 | 9e-43 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 7e-24 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A1U7YQY4 | 2e-41 | A0A1U7YQY4_NICSY; protein RADIALIS-like 3 | ||||
STRING | XP_009801639.1 | 3e-42 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 2e-25 | RAD-like 6 |