PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009801579.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 555aa MW: 61355.1 Da PI: 6.5962 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47 | 6.4e-15 | 174 | 233 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_009801579.1 174 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 233 57*******************666664477446*************************98 PP | |||||||
2 | AP2 | 39.4 | 1.5e-12 | 278 | 331 | 3 | 55 |
AP2 3 ykGV....rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV +++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_009801579.1 278 YRGVtrsgSRHHQHGRWQARIGRVAG---NKDLYLGTFTTEEEAAEAYDIAAIKFRG 331 8999999989999*******988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.75E-17 | 174 | 243 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.22E-23 | 174 | 243 | No hit | No description |
Pfam | PF00847 | 7.2E-12 | 174 | 233 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-30 | 175 | 247 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-16 | 175 | 242 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.256 | 175 | 241 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 176 | 187 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.14E-22 | 276 | 339 | No hit | No description |
SMART | SM00380 | 4.5E-28 | 277 | 345 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-16 | 277 | 339 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.979 | 277 | 339 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-6 | 278 | 331 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-16 | 285 | 340 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.7E-6 | 321 | 341 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MNSNNWLSFP LSPTHSSLPP HLQTTQSHHF TLGLVNETID NPFHNQEWNL MNTQGSNEVP 60 KVADFLGVNK SDENQSELVH YNEIQSNDSD YLFQNNSVMP MQNALAPTGN YELQENACNI 120 QSLTLSMGSG KGSTSETSAS PSATTTVNAS ENSNTSIVEA APRRTLDTFG QRTSIYRGVT 180 RHRWTGRYEA HLWDNSCRRE GQSRKGRQVY LGGYDKEEKA ARAYDLAALK YWGTSTTTNF 240 PISNYEKELE DMKHMTRQEF VAAIRRKSSG FSRGASMYRG VTRSGSRHHQ HGRWQARIGR 300 VAGNKDLYLG TFTTEEEAAE AYDIAAIKFR GLNAVTNFDM NRYDVKAILE SNTLPIGGGA 360 AKRLKEAQAL ESSRKRDQEM IALNSSFQYG NSSTSNNPLH AYPLLQQQPF SIESHQPLMT 420 LENQEPSHFH QSYLQTQLQL HPAVQTSHYD STHQFYNNYL QSNPVFLHGL MENGGGSSST 480 GSYSTGGYFG NSTGLGGISS NSTSNGVGGG GNGEEVALVK VDYDNMPVNG SNYNGWSGDS 540 SVQGSNPGVF SMWND |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009801579.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 isoform X1 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A1U7YQT0 | 0.0 | A0A1U7YQT0_NICSY; AP2-like ethylene-responsive transcription factor PLT2 isoform X1 | ||||
STRING | XP_009801579.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2246 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |