PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009801563.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 643aa    MW: 71547.3 Da    PI: 7.0435
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009801563.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.85.7e-29194247155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  XP_009801563.1 194 KPRVVWSVELHQQFVQAVHQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 247
                     79*******************.********************************8 PP
2Response_reg821.8e-27141221109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l++ +y +v+ +  +e al ll+e++  +D+++ D+ mp+mdG++ll++i  e  +lp+i+++a ++++ + + +  G
  XP_009801563.1  14 VLVVDDDPTCLRILEKMLRNCHY-QVTKCNRAEVALSLLRENKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDSKDVVMKGVTHG 106
                     89*********************.***************999999**********************6654.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +e+l +
  XP_009801563.1 107 AYDYLIKPVRIEALKN 122
                     ************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.5E-1811642IPR017053Response regulator B-type, plant
SuperFamilySSF521722.42E-3611135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.1E-4211135No hitNo description
SMARTSM004481.4E-3112124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.94813128IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2414122IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.05E-2815127No hitNo description
SuperFamilySSF466891.79E-20191251IPR009057Homeodomain-like
PROSITE profilePS5129411.674191250IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-30193252IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-25194247IPR006447Myb domain, plants
PfamPF002496.5E-9196246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MSTVSDQFPV GLRVLVVDDD PTCLRILEKM LRNCHYQVTK CNRAEVALSL LRENKNGFDI  60
VISDVHMPDM DGFKLLEHIG LEMDLPVIMM SADDSKDVVM KGVTHGAYDY LIKPVRIEAL  120
KNIWQHVVRK KKHEWKDNNY DQSGSVEEGD RQQKLPEDAD YSSSANEGNW RNSKKRKEEE  180
EEAEERDDTA TLKKPRVVWS VELHQQFVQA VHQLGIDKAV PKKILELMNV PGLTRENVAS  240
HLQKYRLYLR RLSGVSQHQS SLNNSFMGRP DATFGTISSL NGLDLQAISA AGQVPAQSLA  300
TLQAAALGRS AATKSAISMP LVDQRNLFSF ENSKLRFPEG QQQLNNSNKQ IDLLHGIPTT  360
MEPKQLANLH HPSQSFVSMN TQVNSMAQHN NPLLLRMSQS QPRAQMLNGA NNGHQVSRLP  420
LSMQQPLSPE GIPGTVPAQS GIVDNARGSV YNPVSQSSSM VDFSLNQSKE LQSYNFSLGS  480
NNSGMPTLTN RGMLQEEMNS DIKGSRGFPS NYDMFNELHQ QKSQNWDLQN VGSTFDASHH  540
PSIQGTRGVS SQLLLQQGIS STHHSGQNRN APSGKPLYSN ADESGHFNPM GGPQLNSLGG  600
NMLAVKAERF SDSDYHSTIY HEQFGQEDLM SAFLKTARKC WTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-20193253464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801563.10.0PREDICTED: two-component response regulator ARR2-like
RefseqXP_016481337.10.0PREDICTED: two-component response regulator ARR2-like isoform X1
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A1S4AXH10.0A0A1S4AXH1_TOBAC; Two-component response regulator
TrEMBLA0A1U7YEK60.0A0A1U7YEK6_NICSY; Two-component response regulator
STRINGXP_009801563.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31912450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-170response regulator 1
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]